RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 AKT2P31751 481 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 CCT8P50990 548 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 VAV2P52735 878 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 CLDN2P57739 230 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 IFI35P80217 286 aaPredicted RBP9.78□□□□□ -0.84
RNF4-221ENST00000513643 BCL2L1Q07817 233 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 ELP6Q0PNE2 266 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 TRAF2Q12933 501 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 LRRC73Q5JTD7 316 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 TPRG1LQ5T0D9 272 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 TIGD7Q6NT04 549 aaPredicted RBP9.78□□□□□ -0.84
RNF4-221ENST00000513643 Q6ZSR6 202 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 DPPA4Q7L190 304 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 OXR1Q8N573 874 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 OR13H1Q8NG92 308 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 PIH1D2Q8WWB5 315 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 KRT35Q92764 455 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 KLHDC7BQ96G42 594 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 SLC32A1Q9H598 525 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 FZD3Q9NPG1 666 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 BTBD3Q9Y2F9 522 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 PCDHGC4Q9Y5F7 938 aa9.78□□□□□ -0.84
RNF4-221ENST00000513643 A0A0U1RQJ8 604 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 A6NNZ2 444 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 TM7SF2O76062 418 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 PGLSO95336 258 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 MAP3K6O95382 1288 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 MMP2P08253 660 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 THEGLP0DJG4 465 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 CCNB1P14635 433 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 CTNNA1P35221 906 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 IGFALSP35858 605 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 GJC1P36383 396 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 TRIM23P36406 574 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 NOP2P46087 812 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 MARCKSL1P49006 195 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 NR2C2P49116 596 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 LIG3P49916 1009 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 MAXP61244 160 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 POLR2LP62875 67 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 NIPAL4Q0D2K0 466 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 BNIP3Q12983 259 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 SGCGQ13326 291 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 FZD2Q14332 565 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 ZNF235Q14590 738 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 SUZ12Q15022 739 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 TRIP6Q15654 476 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 PPP2R5EQ16537 467 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 WSCD2Q2TBF2 565 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 LIPIQ6XZB0 460 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 SPOCD1Q6ZMY3 1216 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 ADAT2Q7Z6V5 191 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 CCDC13Q8IYE1 715 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 RCOR2Q8IZ40 523 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 SLC25A45Q8N413 288 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 ACRBPQ8NEB7 543 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 EXD1Q8NHP7 514 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 RNF25Q96BH1 459 aaPredicted RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 SCRN2Q96FV2 425 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 COQ10AQ96MF6 247 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 LGMNQ99538 433 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 BRD8Q9H0E9 1235 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 LUC7LQ9NQ29 371 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 MBNL1Q9NR56 388 aaKnown RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 RBM22Q9NW64 420 aaKnown RBP eCLIP9.77□□□□□ -0.851e-9■■■■■ 27.3
RNF4-221ENST00000513643 KLF15Q9UIH9 416 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 PNMA8BQ9ULN7 279 aaPredicted RBP9.77□□□□□ -0.85
RNF4-221ENST00000513643 EFR3BQ9Y2G0 817 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 PCDHA3Q9Y5H8 950 aa9.77□□□□□ -0.85
RNF4-221ENST00000513643 IGF2RP11717 2491 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 hCG_1818297A0A087WSY0 165 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 SPAARA0A1B0GVQ0 90 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 GRID2IPA4D2P6 1211 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 APOL1O14791 398 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 SPOPO43791 374 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 ZRANB2O95218 330 aaKnown RBP eCLIP9.76□□□□□ -0.85
RNF4-221ENST00000513643 CSF2P04141 144 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 KRT1P04264 644 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 PRKCGP05129 697 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 HLA-DQB2P05538 268 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 PDHA1P08559 390 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 HOXC4P09017 264 aaPredicted RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 C6P13671 934 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 NME1P15531 152 aaKnown RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 CTNNA2P26232 953 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 PTPN7P35236 360 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 GRK6P43250 576 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 RABIFP47224 123 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 ARRB1P49407 418 aaPredicted RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 COPS2P61201 443 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 YPEL5P62699 121 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 ZBTB17Q13105 803 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 PDK1Q15118 436 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 PRKD1Q15139 912 aaPredicted RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 CDKN3Q16667 212 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 TFDP3Q5H9I0 405 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 ERAP2Q6P179 960 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 NPNTQ6UXI9 565 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 KDM7AQ6ZMT4 941 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 RAB44Q7Z6P3 723 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms