RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 CDKN2DP55273 166 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 EFEMP1Q12805 493 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 KCNA10Q16322 511 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 MARC1Q5VT66 337 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 AGAP9Q5VTM2 703 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 NAIF1Q69YI7 327 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TMEM207Q6UWW9 146 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 NUP93Q8N1F7 819 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 PGBD5Q8N414 524 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 SPPL2BQ8TCT7 592 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 CALML6Q8TD86 181 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 IGSF8Q969P0 613 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 PHF21BQ96EK2 531 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TMA16Q96EY4 203 aaKnown RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 UBXN10Q96LJ8 280 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TRAPPC9Q96Q05 1148 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 ZYG11BQ9C0D3 744 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 SP110Q9HB58 689 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 TMEM248Q9NWD8 314 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 FNIP2Q9P278 1114 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 MARCH4Q9P2E8 410 aaPredicted RBP9.92□□□□□ -0.82
CLIP1-204ENST00000501271 KCTD3Q9Y597 815 aa9.92□□□□□ -0.82
CLIP1-204ENST00000501271 ARHGEF37A1IGU5 675 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 MROH6A6NGR9 719 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 SEPT4O43236 478 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 PEX1O43933 1283 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 PAX3P23760 479 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 SATB1Q01826 763 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 MED21Q13503 144 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ART3Q13508 389 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 SLC14A2Q15849 920 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 PPP1R3AQ16821 1122 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 TRIM71Q2Q1W2 868 aaKnown RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 SIRPB2Q5JXA9 342 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 MFSD14CQ5VZR4 134 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 CHSY3Q70JA7 882 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 CUZD1Q86UP6 607 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 PIM3Q86V86 326 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 CIR1Q86X95 450 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ZNF354CQ86Y25 554 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 FAM156AQ8NDB6 213 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 BHLHE22Q8NFJ8 381 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 CEP70Q8NHQ1 597 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 EFCAB1Q9HAE3 211 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ZFYVE28Q9HCC9 887 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 VPS45Q9NRW7 570 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 C6orf203Q9P0P8 240 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 UXTQ9UBK9 157 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 DTNAQ9Y4J8 743 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 CCDC189A1A4V9 331 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 INPPL1O15357 1258 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 OAZ2O95190 189 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 PAPSS2O95340 614 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 WISP3O95389 354 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 FESP07332 822 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ATXN1LP0C7T5 689 aaKnown RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 HSPA1AP0DMV8 641 aaKnown RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 HSPA1BP0DMV9 641 aaKnown RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ME2P23368 584 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ETFBP38117 255 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 DSC1Q08554 894 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 RFTN1Q14699 578 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 MMEL1Q495T6 779 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 CLLU1OSQ5K130 101 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 GPR158Q5T848 1215 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 MAP3K21Q5TCX8 1036 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 RAP1GAP2Q684P5 730 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 FBXL22Q6P050 247 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 RTN4RL1Q86UN2 441 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 MIB1Q86YT6 1006 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 TEX26Q8N6G2 289 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 OR6P1Q8NGX9 317 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ARRDC2Q8TBH0 407 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 FATE1Q969F0 183 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 HDAC10Q969S8 669 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 DCUN1D1Q96GG9 259 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 KLHL32Q96NJ5 620 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 GCNAQ96QF7 691 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 GSTO2Q9H4Y5 243 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 MEAF6Q9HAF1 191 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 RIMS3Q9UJD0 308 aa9.91□□□□□ -0.82
CLIP1-204ENST00000501271 PRG3Q9Y2Y8 225 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-204ENST00000501271 ANKRD36A6QL64 1941 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 IGLV3-10A0A075B6K4 115 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 UBFD1O14562 309 aaKnown RBP9.9□□□□□ -0.82
CLIP1-204ENST00000501271 SLC7A4O43246 635 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 LDB2O43679 373 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 SOAT2O75908 522 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 SNUPNO95149 360 aaKnown RBP9.9□□□□□ -0.82
CLIP1-204ENST00000501271 SLC2A3P11169 496 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 HDCP19113 662 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 TCN1P20061 433 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-204ENST00000501271 KCNC1P48547 511 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 NKX3-2P78367 333 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 ADGRE1Q14246 886 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 ACAP2Q15057 778 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 THEMIS2Q5TEJ8 643 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 KLC3Q6P597 504 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 GALNT7Q86SF2 657 aa9.9□□□□□ -0.82
CLIP1-204ENST00000501271 DCP1BQ8IZD4 617 aaKnown RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms