RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 A0A087X1B8 175 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 C15orf38-AP3S2A0A0A6YYH1 394 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 HNRNPLP14866 589 aaKnown RBP eCLIP16.21■□□□□ 0.184e-6■■□□□ 12.5
MSH5-SAPCD1-208ENST00000498473 ARSAP15289 507 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 KCNA5P22460 613 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SULT2A1Q06520 285 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ART3Q13508 389 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 AFMIDQ63HM1 303 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ZNF470Q6ECI4 717 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 BEND5Q7L4P6 421 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ARPINQ7Z6K5 226 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ACBD6Q9BR61 282 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 COPS7BQ9H9Q2 264 aaPredicted RBP16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 DMAP1Q9NPF5 467 aaPredicted RBP16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RBM22Q9NW64 420 aaKnown RBP eCLIP16.21■□□□□ 0.182e-13■■■■■ 57.4
MSH5-SAPCD1-208ENST00000498473 PCDHGB4Q9UN71 923 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PCDHGB5Q9Y5G0 923 aa16.21■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 EN2P19622 333 aaPredicted RBP16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ATP5F1P24539 256 aaPredicted RBP16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RPL9P32969 192 aaKnown RBP16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 BRCC3P46736 316 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 POU4F1Q01851 419 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TECRLQ5HYJ1 363 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NOMO2Q5JPE7 1267 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 BRMS1LQ5PSV4 323 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ACBD5Q5T8D3 534 aaPredicted RBP16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 BTBD8Q5XKL5 378 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 GK5Q6ZS86 529 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CHSY3Q70JA7 882 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PIWIL4Q7Z3Z4 852 aaKnown RBP16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 KDELC2Q7Z4H8 507 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PIP4K2CQ8TBX8 421 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 LRGUKQ96M69 825 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 OLFM1Q99784 485 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PKP2Q99959 881 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 KATNAL1Q9BW62 490 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NCKIPSDQ9NZQ3 722 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SFMBT1Q9UHJ3 866 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MIA3Q5JRA6 1907 aa16.2■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TRPC5OSA6NMA1 111 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FGF10O15520 208 aaPredicted RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MSI1O43347 362 aaKnown RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CRTAMO95727 393 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CTSHP09668 335 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CPB1P15086 417 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ATXN3P54252 364 aaPredicted RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PFKPQ01813 784 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PAN2Q504Q3 1202 aaKnown RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NEPROQ6NW34 567 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 LZTR1Q8N653 840 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 OR10T2Q8NGX3 314 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CEP70Q8NHQ1 597 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SPPL2BQ8TCT7 592 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CASP10Q92851 521 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FCRL2Q96LA5 508 aaPredicted RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SLX1AQ9BQ83 275 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CHST12Q9NRB3 414 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 Q9Y3F1 56 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 EYSQ5T1H1 3165 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TTC3P53804 2025 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 KCNU1A8MYU2 1149 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ODC1P11926 461 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MNX1P50219 401 aaPredicted RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CSHL1Q14406 222 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RARS2Q5T160 578 aaKnown RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TAF2Q6P1X5 1199 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 KDELC1Q6UW63 502 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 C14orf80Q86SX3 495 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SATL1Q86VE3 508 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FAM156AQ8NDB6 213 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ADCY4Q8NFM4 1077 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 DLG3Q92796 817 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TMA16Q96EY4 203 aaKnown RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 NDNQ99608 321 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MTG1Q9BT17 334 aaPredicted RBP16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CATSPERBQ9H7T0 1116 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 STARD7Q9NQZ5 370 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 GTSE1Q9NYZ3 720 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RAB26Q9ULW5 256 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 GIT1Q9Y2X7 761 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PCDHGA7Q9Y5G6 932 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TRPV2Q9Y5S1 764 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SLC4A7Q9Y6M7 1214 aa16.19■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CYP11A1P05108 521 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PAMP19021 973 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PMLP29590 882 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SEPT6Q14141 434 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RPS27LQ71UM5 84 aaKnown RBP16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PNPLA1Q8N8W4 532 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TMEM102Q8N9M5 508 aaPredicted RBP16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 FSD1LQ9BXM9 530 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 UTP6Q9NYH9 597 aaKnown RBP16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 BCAP29Q9UHQ4 241 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 A8MT66 165 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 OR6B1O95007 311 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PEX11BO96011 259 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CHRNA1P02708 482 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 HTR7P34969 479 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PSMD8P48556 350 aa16.18■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 WNT3AP56704 352 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms