RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	MYO1A	Q9UBC5	1043 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	IPO11	Q9UI26	975 aa	Known RBP	11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	OR1A2	Q9Y585	309 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	RAI2	Q9Y5P3	530 aa		11.74	□□□□□ -0.53
VTI1A-208	ENST00000494728	SYCE3	A1L190	88 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	CPED1	A4D0V7	1026 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	NEMP2	A6NFY4	417 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	ARHGAP42	A6NI28	874 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	LMO7DN	F2Z398	122 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	TRAFD1	O14545	582 aa	Predicted RBP	11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	PRPSAP2	O60256	369 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	PCCB	P05166	539 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	GP1BA	P07359	652 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	CCDC172	P0C7W6	258 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	TSHR	P16473	764 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	EIF4A3	P38919	411 aa	Known RBP	11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	ABCG1	P45844	678 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	LIG3	P49916	1009 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	ADK	P55263	362 aa	Known RBP	11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	E2F1	Q01094	437 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	RAD51	Q06609	339 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	KLHL30	Q0D2K2	578 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	SLC10A7	Q0GE19	358 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	HS1BP3	Q53T59	392 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	SRL	Q86TD4	932 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	LUZP1	Q86V48	1076 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	SFTPA2	Q8IWL1	248 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	PGBD5	Q8N414	524 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	KY	Q8NBH2	561 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	ECHDC3	Q96DC8	303 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	DUSP23	Q9BVJ7	150 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	ISCU	Q9H1K1	167 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	SP110	Q9HB58	689 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	CBX8	Q9HC52	389 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	RABGEF1	Q9UJ41	708 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	ATP8A1	Q9Y2Q0	1164 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	TLN1	Q9Y490	2541 aa	Known RBP	11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	CSNK1G3	Q9Y6M4	447 aa		11.73	□□□□□ -0.53
VTI1A-208	ENST00000494728	YY2	O15391	372 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	LZTS3	O60299	673 aa	Predicted RBP	11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	USP12	O75317	370 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	PALM	O75781	387 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	AMPD1	P23109	780 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	YPEL5	P62699	121 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	GABRE	P78334	506 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	SLC25A11	Q02978	314 aa	Known RBP	11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	ELP6	Q0PNE2	266 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	INPP5A	Q14642	412 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	LRRC14	Q15048	493 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	AGER	Q15109	404 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	PTPRR	Q15256	657 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	DPYSL2	Q16555	572 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	TBC1D25	Q3MII6	688 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	C6orf132	Q5T0Z8	1188 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	PCDH19	Q8TAB3	1148 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	MAPK15	Q8TD08	544 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	HSPH1	Q92598	858 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	IL12RB2	Q99665	862 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	CINP	Q9BW66	212 aa	Predicted RBP	11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	THAP2	Q9H0W7	228 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	FGF22	Q9HCT0	170 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	ASCL3	Q9NQ33	180 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	SPAST	Q9UBP0	616 aa		11.72	□□□□□ -0.53
VTI1A-208	ENST00000494728	COL6A6	A6NMZ7	2263 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	FLNB	O75369	2602 aa	Known RBP	11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	EME2	A4GXA9	379 aa	Predicted RBP	11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	TMEM202	A6NGA9	273 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	SMTNL1	A8MU46	457 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728		A8MX80	341 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	EIF3CL	B5ME19	914 aa	Known RBP	11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	TPP1	O14773	563 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	DAPK3	O43293	454 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	RNF8	O76064	485 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	CD48	P09326	243 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	RARA	P10276	462 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	CR2	P20023	1033 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	XPA	P23025	273 aa	Predicted RBP	11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	SERPINA4	P29622	427 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	CSNK1D	P48730	415 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	HK3	P52790	923 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	FANCC	Q00597	558 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	PPARD	Q03181	441 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	IL10RB	Q08334	325 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	CCDC173	Q0VFZ6	552 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	PTK2B	Q14289	1009 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	NFATC4	Q14934	902 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	NR0B2	Q15466	257 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	ISX	Q2M1V0	245 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	FILIP1L	Q4L180	1135 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	TDRD12	Q587J7	1177 aa	Known RBP	11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	FIGN	Q5HY92	759 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	PPP1R2P3	Q6NXS1	205 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	BRAT1	Q6PJG6	821 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	POLN	Q7Z5Q5	900 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	HID1	Q8IV36	788 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	HCAR2	Q8TDS4	363 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	BTN2A2	Q8WVV5	523 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	OR1E3	Q8WZA6	343 aa		11.71	□□□□□ -0.53
VTI1A-208	ENST00000494728	ATXN7L3B	Q96GX2	97 aa		11.71	□□□□□ -0.53

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