RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 SNX25Q9H3E2 840 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 C12orf65Q9H3J6 166 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ZSCAN16Q9H4T2 348 aaPredicted RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 IL21RQ9HBE5 538 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PRDM8Q9NQV8 689 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ETNK2Q9NVF9 386 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 FBXO34Q9NWN3 711 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 TRNAU1APQ9NX07 287 aaKnown RBP4.26□□□□□ -1.73
BRCA1-220ENST00000492859 PGPEP1Q9NXJ5 209 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 EURLQ9NYK6 297 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 TAS2R10Q9NYW0 307 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 COL20A1Q9P218 1284 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 DNAJB11Q9UBS4 358 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 LPAR3Q9UBY5 353 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 IL20RAQ9UHF4 553 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 VPS51Q9UID3 782 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 AP3M1Q9Y2T2 418 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 HS3ST4Q9Y661 456 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 KCNMB2Q9Y691 235 aa4.26□□□□□ -1.73
BRCA1-220ENST00000492859 ARGFXA6NJG6 315 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 GLOD5A6NK44 160 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SLC22A31A6NKX4 558 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 F8WDY8 70 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 UBE2Q2LH0YL09 131 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 HRKO00198 91 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PGRMC1O00264 195 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PLK4O00444 970 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 BTN3A1O00481 513 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 DCLK1O15075 740 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 MATN3O15232 486 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 NDUFA2O43678 99 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 CABYRO75952 493 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 KRT36O76013 467 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 UPP2O95045 317 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 IL1BP01584 269 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 KLKB1P03952 638 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 KRT6BP04259 564 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 TP53P04637 393 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 YES1P07947 543 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 DARSP14868 501 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PFKLP17858 780 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 EPORP19235 508 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 NFKB1P19838 968 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 AGAP20933 346 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 YWHAQP27348 245 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 GATA4P43694 442 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 KRT6CP48668 564 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 LMAN1P49257 510 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ENTPD1P49961 510 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 CCR4P51679 360 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 CDH6P55285 790 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SKP1P63208 163 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PHC1P78364 1004 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ADAM17P78536 824 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 AMPD2Q01433 879 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 KRT76Q01546 638 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SRSF11Q05519 484 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ZP2Q05996 745 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 FAAP100Q0VG06 881 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SLAQ13239 276 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PMS2P3Q13401 168 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ART3Q13508 389 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 RRP1BQ14684 758 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 CLCA4Q14CN2 919 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 KLHL40Q2TBA0 621 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 C3orf36Q3SXR2 165 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PAN2Q504Q3 1202 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 HIKESHIQ53FT3 197 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 C3orf38Q5JPI3 329 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 RALGPS1Q5JS13 557 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PLAC9Q5JTB6 97 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 AGBL2Q5U5Z8 902 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ZDHHC20Q5W0Z9 365 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 JADE1Q6IE81 842 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SULT1C3Q6IMI6 304 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PSRC1Q6PGN9 363 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ERN2Q76MJ5 926 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 KCNK18Q7Z418 384 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ZNF573Q86YE8 665 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 RHOT2Q8IXI1 618 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SLC15A4Q8N697 577 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 C12orf50Q8NA57 414 aaPredicted RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 POC5Q8NA72 575 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 EXOC6Q8TAG9 804 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ADAMTS16Q8TE57 1224 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 CKAP2Q8WWK9 683 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PRPF31Q8WWY3 499 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 WFDC12Q8WWY7 111 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 CPA5Q8WXQ8 436 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SMG7Q92540 1137 aaKnown RBP4.25□□□□□ -1.73
BRCA1-220ENST00000492859 SPSB4Q96A44 273 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 TMEM186Q96B77 213 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 CEP170P1Q96L14 293 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 MRGPRX3Q96LB0 322 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 ZNF558Q96NG5 402 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 TRAPPC9Q96Q05 1148 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 PKP2Q99959 881 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 FUZQ9BT04 418 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 IMPG2Q9BZV3 1241 aa4.25□□□□□ -1.73
BRCA1-220ENST00000492859 MCOLN1Q9GZU1 580 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms