RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-208ENST00000489247 CHMP2BQ9UQN3 213 aa5.65□□□□□ -1.5
ATG4A-208ENST00000489247 HBS1LQ9Y450 684 aaKnown RBP5.65□□□□□ -1.5
ATG4A-208ENST00000489247 ZNF451Q9Y4E5 1061 aa5.65□□□□□ -1.5
ATG4A-208ENST00000489247 PCDHA11Q9Y5I1 949 aa5.65□□□□□ -1.5
ATG4A-208ENST00000489247 NLRC5Q86WI3 1866 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TTC3P53804 2025 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 IQANK1A0A1B0GTG1 560 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 MAGEB16A2A368 324 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SDR42E2A6NKP2 422 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TBKBP1A7MCY6 615 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 E9PAM4 449 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 EBAG9O00559 213 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 KIAA0355O15063 1070 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 MATN3O15232 486 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 MAFKO60675 156 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PQBP1O60828 265 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ABLIM3O94929 683 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ZWINTO95229 277 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PEX11BO96011 259 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 CPP00450 1065 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SOD2P04179 222 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SRFP11831 508 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ALADP13716 330 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 CREB1P16220 341 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PGAM1P18669 254 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 YWHAQP27348 245 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PSMB4P28070 264 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ADRA1AP35348 466 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 MAGEA12P43365 314 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TUFMP49411 452 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SERPINB9P50453 376 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 NEK3P51956 506 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 NDST2P52849 883 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SEC24CP53992 1094 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 RNF4P78317 190 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 DSG1Q02413 1049 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TLE2Q04725 743 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ZP2Q05996 745 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 NIPAL4Q0D2K0 466 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 AP1B1Q10567 949 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 BTG3Q14201 252 aaPredicted RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ITIH4Q14624 930 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TMED2Q15363 201 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SLC14A2Q15849 920 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PKN2Q16513 984 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 USP41Q3LFD5 358 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 KBTBD12Q3ZCT8 623 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TRIM60Q495X7 471 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 STXBP5Q5T5C0 1151 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 FAXCQ5TGI0 409 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PIK3R6Q5UE93 754 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TTC19Q6DKK2 380 aaPredicted RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TMEM135Q86UB9 458 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TMEM173Q86WV6 379 aaPredicted RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 CHSY1Q86X52 802 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SCN4BQ8IWT1 228 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 CMTR2Q8IYT2 770 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SLC39A11Q8N1S5 342 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TEX26Q8N6G2 289 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 CNTD1Q8N815 330 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ANKS4BQ8N8V4 417 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 BANPQ8N9N5 519 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ATAD1Q8NBU5 361 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 AGBL5Q8NDL9 886 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PDZD8Q8NEN9 1154 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ACMSDQ8TDX5 336 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TOP1MTQ969P6 601 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PPP1R14AQ96A00 147 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TADA1Q96BN2 335 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 GRAMD1AQ96CP6 724 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 STAMBPL1Q96FJ0 436 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TRMT2BQ96GJ1 504 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 OXNAD1Q96HP4 312 aaPredicted RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 IGSF21Q96ID5 467 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 BTN2A3PQ96KV6 586 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 MAGEB18Q96M61 343 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 FCRL5Q96RD9 977 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SMC6Q96SB8 1091 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SELENOSQ9BQE4 189 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 VN1R3Q9BXE9 311 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 NSRP1Q9H0G5 558 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 KLHL25Q9H0H3 589 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 LRRC40Q9H9A6 602 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 ARNT2Q9HBZ2 717 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 MRM3Q9HC36 420 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TLR8Q9NR97 1041 aaKnown RBP5.64□□□□□ -1.51
ATG4A-208ENST00000489247 NKIRAS1Q9NYS0 192 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 FBXL21Q9UKT6 434 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 HS3ST4Q9Y661 456 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PLXNA3P51805 1871 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 TANC1Q9C0D5 1861 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 PTPRDP23468 1912 aa5.64□□□□□ -1.51
ATG4A-208ENST00000489247 SYNJ2BP-COX16A0A087WUM0 186 aa5.63□□□□□ -1.51
ATG4A-208ENST00000489247 FAM237BA0A1B0GVD1 139 aa5.63□□□□□ -1.51
ATG4A-208ENST00000489247 WDR27A2RRH5 827 aa5.63□□□□□ -1.51
ATG4A-208ENST00000489247 ANKRD34BA5PLL1 514 aa5.63□□□□□ -1.51
ATG4A-208ENST00000489247 ERICH4A6NGS2 130 aa5.63□□□□□ -1.51
ATG4A-208ENST00000489247 SLC38A8A6NNN8 435 aa5.63□□□□□ -1.51
ATG4A-208ENST00000489247 POC1B-GALNT4F8VUJ3 575 aa5.63□□□□□ -1.51
ATG4A-208ENST00000489247 KCNK1O00180 336 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms