RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 STON2Q8WXE9 905 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 HMCESQ96FZ2 354 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 KCTD3Q9Y597 815 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 AP4B1Q9Y6B7 739 aa18.06■□□□□ 0.48
VIM-206ENST00000487938 UBDO15205 165 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 RNASEH2AO75792 299 aaKnown RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 CNTN5O94779 1100 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 GPR15P49685 360 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 ARSDP51689 593 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 SLC39A12Q504Y0 691 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 C6orf52Q5T4I8 152 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 IL31Q6EBC2 164 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 KLC3Q6P597 504 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 LAYNQ6UX15 382 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 MARVELD2Q8N4S9 558 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 ATP6V1E2Q96A05 226 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 ADAM2Q99965 735 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 ALG9Q9H6U8 611 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 EML4Q9HC35 981 aaKnown RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 ABI2Q9NYB9 513 aaPredicted RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 DSEQ9UL01 958 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 VWA7Q9Y334 891 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 PRSS51A0A1B0GVH4 220 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 ATP6AP2A0A1C7CYW4 349 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 TRIM38O00635 465 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 FBP2O00757 339 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 UBFD1O14562 309 aaKnown RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 GPC4O75487 556 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 ATP6AP2O75787 350 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 CDKN2DP55273 166 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 RPL26P61254 145 aaKnown RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 FASTKQ14296 549 aaKnown RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 MAPRE1Q15691 268 aaKnown RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 DDR2Q16832 855 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 GPR158Q5T848 1215 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 IL23RQ5VWK5 629 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 KIAA0408Q6ZU52 694 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 CHSY3Q70JA7 882 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 HDAC10Q969S8 669 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 IMP4Q96G21 291 aaKnown RBP18.05■□□□□ 0.48
VIM-206ENST00000487938 PPP1R2P1Q96PQ5 205 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 MEAF6Q9HAF1 191 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 CRYL1Q9Y2S2 319 aa18.05■□□□□ 0.48
VIM-206ENST00000487938 COL4A4P53420 1690 aaPredicted RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 PSMD12O00232 456 aaPredicted RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 KIF3CO14782 793 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 PABPC4LP0CB38 370 aaKnown RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 HSPA1AP0DMV8 641 aaKnown RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 HSPA1BP0DMV9 641 aaKnown RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 AKR1A1P14550 325 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 YWHAQP27348 245 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 HTR7P34969 479 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 RGS2P41220 211 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 SATB1Q01826 763 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 MGAT3Q09327 533 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 RALGDSQ12967 914 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 TUSC3Q13454 348 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 TAF1CQ15572 869 aaPredicted RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 ALFQ53S48 1182 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 MARC1Q5VT66 337 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 PIM3Q86V86 326 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 TICAM1Q8IUC6 712 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 ADCY4Q8NFM4 1077 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 CALML6Q8TD86 181 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 SEMA6AQ9H2E6 1030 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 ARNT2Q9HBZ2 717 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 MARCH4Q9P2E8 410 aaPredicted RBP18.04■□□□□ 0.48
VIM-206ENST00000487938 APPL1Q9UKG1 709 aa18.04■□□□□ 0.48
VIM-206ENST00000487938 MYOCOSA0A1B0GUC4 107 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 GJB3O75712 270 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 SUPT7LO94864 414 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 SLC4A1P02730 911 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 MMP2P08253 660 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 SMIM18P0DKX4 95 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 ETFBP38117 255 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 RENBPP51606 427 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 CLCN5P51795 746 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 HUNKP57058 714 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 CDKL1Q00532 357 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 YWHAHQ04917 246 aaPredicted RBP18.03■□□□□ 0.48
VIM-206ENST00000487938 PTPRCAPQ14761 206 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 REP15Q6BDI9 236 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 IYDQ6PHW0 289 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 SERINC5Q86VE9 423 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 CILP2Q8IUL8 1156 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 OR9I1Q8NGQ6 314 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 PIP4K2CQ8TBX8 421 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 EXT2Q93063 718 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 PSMG2Q969U7 264 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 UBXN10Q96LJ8 280 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 Q9H521 79 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 RAB26Q9ULW5 256 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 TRAF6Q9Y4K3 522 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 TRPM7Q96QT4 1865 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 A0A0U1RQF3 1178 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 ZNF623O75123 536 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 RBP1P09455 135 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 STX5Q13190 355 aa18.03■□□□□ 0.48
VIM-206ENST00000487938 LRP8Q14114 963 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms