RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CDRT15Q96T59 188 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 RBBP8Q99708 897 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 C11orf84Q9BUA3 381 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 GPR88Q9GZN0 384 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 NMUR2Q9GZQ4 415 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ZDHHC6Q9H6R6 413 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ASB8Q9H765 288 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 CREBZFQ9NS37 354 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 NKX1-2Q9UD57 310 aaPredicted RBP11.09□□□□□ -0.63
HDAC6-228ENST00000486227 ADAMTS5Q9UNA0 930 aa11.09□□□□□ -0.63
HDAC6-228ENST00000486227 MYO1GB0I1T2 1018 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 RAD51BO15315 384 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 TMEM63AO94886 807 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 ACRP10323 421 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 EPB42P16452 691 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 RAB10P61026 200 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 SNRPD1P62314 119 aaKnown RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 B3GNT9Q6UX72 402 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 TRIM74Q86UV6 250 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 TRIM73Q86UV7 250 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 PLD3Q8IV08 490 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 RBM15BQ8NDT2 890 aaKnown RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 GRIN3AQ8TCU5 1115 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 PTTG2Q9NZH5 202 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 CNTN3Q9P232 1028 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 PNMA8BQ9ULN7 279 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 FZD10Q9ULW2 581 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 PCDHB9Q9Y5E1 797 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 C5orf58C9J3I9 102 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 C1QTNF3-AMACRE9PGA6 284 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 NDUFS2O75306 463 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 GCATO75600 419 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 C2P06681 752 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 PBX3P40426 434 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 CNPY1Q3B7I2 92 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 ACSBG2Q5FVE4 666 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 LDLRAD1Q5T700 205 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 C11orf96Q7Z7L8 435 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 GPSM1Q86YR5 675 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 GSTCDQ8NEC7 633 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 MFSD3Q96ES6 412 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 OTUB1Q96FW1 271 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 AGO3Q9H9G7 860 aaKnown RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 ATAD3AQ9NVI7 634 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 XPR1Q9UBH6 696 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 RSL24D1Q9UHA3 163 aaKnown RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 CIDEBQ9UHD4 219 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 FBXW11Q9UKB1 542 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 CLUHO75153 1309 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 MYH7P12883 1935 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 LYPLA1O75608 230 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 BCL10O95999 233 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 SLC2A4P14672 509 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 TSPAN8P19075 237 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 ATP5F1P24539 256 aaPredicted RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 MAPK8P45983 427 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 GRIA4P48058 902 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 FASTKQ14296 549 aaKnown RBP11.08□□□□□ -0.64
HDAC6-228ENST00000486227 ATP6AP1LQ52LC2 224 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 OR52K2Q8NGK3 314 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 XYLT2Q9H1B5 865 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 PIF1Q9H611 641 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 SH3GLB1Q9Y371 365 aa11.08□□□□□ -0.64
HDAC6-228ENST00000486227 EME2A4GXA9 379 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-228ENST00000486227 USP1O94782 785 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 CTPS1P17812 591 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 DPYSL2Q16555 572 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 GPR158Q5T848 1215 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 TLDC1Q6P9B6 456 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 C10orf107Q8IVU9 208 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 TAGAPQ8N103 731 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 PTGR2Q8N8N7 351 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-228ENST00000486227 OR6K2Q8NGY2 324 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 TMEM159Q96B96 161 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 SLC9A7Q96T83 725 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 SEMA4BQ9NPR2 832 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-228ENST00000486227 MAN1C1Q9NR34 630 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 PLCH1Q4KWH8 1693 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 BTAF1O14981 1849 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 AP2A1O95782 977 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 MT-CYBP00156 380 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-228ENST00000486227 ADH1CP00326 375 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 RHOQP17081 205 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 TYMPP19971 482 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 USP46P62068 366 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 STXBP5Q5T5C0 1151 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 TRMT11Q7Z4G4 463 aaKnown RBP11.07□□□□□ -0.64
HDAC6-228ENST00000486227 CHPFQ8IZ52 775 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 FNDC5Q8NAU1 212 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 GLIS1Q8NBF1 620 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 OR56A4Q8NGH8 313 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 SLC35F5Q8WV83 523 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 C10orf82Q8WW14 230 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 B3GALT6Q96L58 329 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 SCHIP1Q9P0W5 487 aaPredicted RBP11.07□□□□□ -0.64
HDAC6-228ENST00000486227 ZMYM5Q9UJ78 669 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 AP4B1Q9Y6B7 739 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 METTL18O95568 372 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 LINGO3P0C6S8 592 aa11.07□□□□□ -0.64
HDAC6-228ENST00000486227 SOAT1P35610 550 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms