RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 NYAP1Q6ZVC0 841 aa21.24■□□□□ 0.99
COL9A3-207ENST00000467819 APTXQ7Z2E3 356 aaKnown RBP21.24■□□□□ 0.99
COL9A3-207ENST00000467819 RD3Q7Z3Z2 195 aa21.24■□□□□ 0.99
COL9A3-207ENST00000467819 CAMK1DQ8IU85 385 aa21.24■□□□□ 0.99
COL9A3-207ENST00000467819 FSTL5Q8N475 847 aaPredicted RBP21.24■□□□□ 0.99
COL9A3-207ENST00000467819 PCDH19Q8TAB3 1148 aa21.24■□□□□ 0.99
COL9A3-207ENST00000467819 HCAR2Q8TDS4 363 aa21.24■□□□□ 0.99
COL9A3-207ENST00000467819 OR1A2Q9Y585 309 aa21.24■□□□□ 0.99
COL9A3-207ENST00000467819 UNC13CQ8NB66 2214 aa21.24■□□□□ 0.99
COL9A3-207ENST00000467819 PMS2P1A4D2B8 440 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 BUB1BO60566 1050 aaPredicted RBP21.23■□□□□ 0.99
COL9A3-207ENST00000467819 CCDC172P0C7W6 258 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 TNFAIP3P21580 790 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 HTR7P34969 479 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 MMP12P39900 470 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 RGRP47804 291 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 LIG3P49916 1009 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 PEX5P50542 639 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 PAPOLAP51003 745 aaKnown RBP21.23■□□□□ 0.99
COL9A3-207ENST00000467819 SPIDRQ14159 915 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 INPP5AQ14642 412 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 NFATC4Q14934 902 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 ELOCQ15369 112 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 ARHGAP40Q5TG30 622 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 ZSWIM9Q86XI8 627 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 KYQ8NBH2 561 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 GRAMD1AQ96CP6 724 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 APOOQ9BUR5 198 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 EDEM3Q9BZQ6 932 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 SLC39A8Q9C0K1 460 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 HSD3B7Q9H2F3 369 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 DONSONQ9NYP3 566 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 PCSK1NQ9UHG2 260 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 ATP8A1Q9Y2Q0 1164 aa21.23■□□□□ 0.99
COL9A3-207ENST00000467819 ARHGAP42A6NI28 874 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 LRRC10BA6NIK2 292 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 TMEM110-MUSTN1A8MSY1 372 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 RASGRP1O95267 797 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 ALPIP09923 528 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 ATP1A3P13637 1013 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 HTR1BP28222 390 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 UCNP55089 124 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 MAMLD1Q13495 774 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 NCAPHQ15003 741 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 BRAT1Q6PJG6 821 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 IGF2-ASQ6U949 168 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 IRF2BP2Q7Z5L9 587 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 SRLQ86TD4 932 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 AOPEPQ8N6M6 819 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 PAF1Q8N7H5 531 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 ARL10Q8N8L6 244 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 TSEN2Q8NCE0 465 aaKnown RBP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 WDR48Q8TAF3 677 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 SCG3Q8WXD2 468 aaKnown RBP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 PRR11Q96HE9 360 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 ZNF641Q96N77 438 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 SLC46A1Q96NT5 459 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 TUBGCP5Q96RT8 1024 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 PEBP4Q96S96 227 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 KCTD15Q96SI1 283 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 SNRNP25Q9BV90 132 aaKnown RBP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 ATP13A3Q9H7F0 1226 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 PARVAQ9NVD7 372 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 KLQ9UEF7 1012 aa21.22■□□□□ 0.99
COL9A3-207ENST00000467819 ARHGEF17Q96PE2 2063 aaPredicted RBP21.22■□□□□ 0.99
COL9A3-207ENST00000467819 DAPK3O43293 454 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 PALMO75781 387 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 SERPINA4P29622 427 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 PDX1P52945 283 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 SRP54P61011 504 aaKnown RBP21.21■□□□□ 0.99
COL9A3-207ENST00000467819 PCSK4Q6UW60 755 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 LSM14AQ8ND56 463 aaKnown RBP21.21■□□□□ 0.99
COL9A3-207ENST00000467819 CCDC74AQ96AQ1 378 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 GBP4Q96PP9 640 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 SYT11Q9BT88 431 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 CINPQ9BW66 212 aaPredicted RBP21.21■□□□□ 0.99
COL9A3-207ENST00000467819 DPH1Q9BZG8 443 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 SP110Q9HB58 689 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 RABGEF1Q9UJ41 708 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 GPR34Q9UPC5 381 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 PCDHGA8Q9Y5G5 932 aa21.21■□□□□ 0.99
COL9A3-207ENST00000467819 ZNF462Q96JM2 2506 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 SCN8AQ9UQD0 1980 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 DFFAO00273 331 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 TEX33O43247 280 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 ANP32AP39687 249 aaKnown RBP21.2■□□□□ 0.98
COL9A3-207ENST00000467819 MTM1Q13496 603 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 TAF1BQ53T94 588 aaPredicted RBP21.2■□□□□ 0.98
COL9A3-207ENST00000467819 PPP6R3Q5H9R7 873 aaPredicted RBP21.2■□□□□ 0.98
COL9A3-207ENST00000467819 ERMARDQ5T6L9 678 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 KCTD16Q68DU8 428 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 ARHGAP36Q6ZRI8 547 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 GKN2Q86XP6 184 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 ARHGAP12Q8IWW6 846 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 ARFGAP1Q8N6T3 406 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 PLA2G15Q8NCC3 412 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 WDR36Q8NI36 951 aaKnown RBP21.2■□□□□ 0.98
COL9A3-207ENST00000467819 PDXPQ96GD0 296 aa21.2■□□□□ 0.98
COL9A3-207ENST00000467819 WDR92Q96MX6 357 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms