RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 MAGEB5Q9BZ81 275 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 RAB6CQ9H0N0 254 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 NUP62CLQ9H1M0 184 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 EPB41L5Q9HCM4 733 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 CHMP5Q9NZZ3 219 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 KLQ9UEF7 1012 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 PCDHB11Q9Y5F2 797 aa13.41□□□□□ -0.26
HMGB3-204ENST00000448905 CACNB4O00305 520 aaPredicted RBP13.4□□□□□ -0.26
HMGB3-204ENST00000448905 DAPK3O43293 454 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 CSNK1DP48730 415 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 NDST2P52849 883 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 GSCP56915 257 aaPredicted RBP13.4□□□□□ -0.26
HMGB3-204ENST00000448905 CCL7P80098 99 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 C1QBPQ07021 282 aaKnown RBP13.4□□□□□ -0.26
HMGB3-204ENST00000448905 ARHGEF7Q14155 803 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 LY6DQ14210 128 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 AGERQ15109 404 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 CYTH1Q15438 398 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 CLEC16AQ2KHT3 1053 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 ALG11Q2TAA5 492 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 DNAJC24Q6P3W2 148 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 USP53Q70EK8 1073 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 PYROXD2Q8N2H3 581 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 PCDH19Q8TAB3 1148 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 TTC9Q92623 222 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 CCDC74AQ96AQ1 378 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 WDR92Q96MX6 357 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 ARHGAP9Q9BRR9 750 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 CNPY3Q9BT09 278 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 GANQ9H2C0 597 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 LRRN3Q9H3W5 708 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 ATP13A3Q9H7F0 1226 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 PCDH12Q9NPG4 1184 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 AKAP7Q9P0M2 348 aaPredicted RBP13.4□□□□□ -0.26
HMGB3-204ENST00000448905 FZD10Q9ULW2 581 aa13.4□□□□□ -0.26
HMGB3-204ENST00000448905 ARID1BQ8NFD5 2236 aaPredicted RBP13.4□□□□□ -0.26
HMGB3-204ENST00000448905 A0A1W2PNU3 283 aaPredicted RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 ARHGAP42A6NI28 874 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 EIF3CLB5ME19 914 aaKnown RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 NVLO15381 856 aaKnown RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 PALMO75781 387 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 RPLP0P05388 317 aaKnown RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 SFTPCP11686 197 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 PNLIPP16233 465 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 GLB1P16278 677 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 SERPINA4P29622 427 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 SLC5A2P31639 672 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 UGT1A5P35504 534 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 JAM2P57087 298 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 KCNC4Q03721 635 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 PTP4A2Q12974 167 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 CLN3Q13286 438 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 MTM1Q13496 603 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 TMEM164Q5U3C3 297 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 PPP1R2P3Q6NXS1 205 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 TAF8Q7Z7C8 310 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 ZSCAN1Q8NBB4 408 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 FAM46DQ8NEK8 389 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 OR56A4Q8NGH8 313 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 EIF3CQ99613 913 aaKnown RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 CMKLR1Q99788 373 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 NOL6Q9H6R4 1146 aaKnown RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 APPL1Q9UKG1 709 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 ATXN7L1Q9ULK2 861 aaPredicted RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 PNMA8BQ9ULN7 279 aaPredicted RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 COQ6Q9Y2Z9 468 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 OR1A2Q9Y585 309 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 HEMK1Q9Y5R4 338 aaPredicted RBP13.39□□□□□ -0.27
HMGB3-204ENST00000448905 DGKBQ9Y6T7 804 aa13.39□□□□□ -0.27
HMGB3-204ENST00000448905 TNFRSF10CO14798 259 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 INSIG1O15503 277 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 PIGNO95427 931 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 PCCBP05166 539 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 HOXC4P09017 264 aaPredicted RBP13.38□□□□□ -0.27
HMGB3-204ENST00000448905 CDK11BP21127 795 aaKnown RBP13.38□□□□□ -0.27
HMGB3-204ENST00000448905 NFKBIAP25963 317 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 CCKBRP32239 447 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 TPI1P60174 286 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 BCL2L1Q07817 233 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 NSUN2Q08J23 767 aaKnown RBP eCLIP13.38□□□□□ -0.27
HMGB3-204ENST00000448905 KRT31Q15323 416 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 TSR1Q2NL82 804 aaKnown RBP13.38□□□□□ -0.27
HMGB3-204ENST00000448905 KIAA1614Q5VZ46 1190 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 OGFOD3Q6PK18 319 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 SRLQ86TD4 932 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 CAMK1DQ8IU85 385 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 Q8N9G6 341 aaPredicted RBP13.38□□□□□ -0.27
HMGB3-204ENST00000448905 KYQ8NBH2 561 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 NETO2Q8NC67 525 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 VOPP1Q96AW1 172 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 EXOC2Q96KP1 924 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 RBM15Q96T37 977 aaKnown RBP eCLIP13.38□□□□□ -0.27
HMGB3-204ENST00000448905 PCDHB18PQ96TA0 734 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 AGPAT1Q99943 283 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 FAM117AQ9C073 453 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 KLC2Q9H0B6 622 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 DPEP2Q9H4A9 486 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 KCTD5Q9NXV2 234 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 LRIT1Q9P2V4 623 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 LHX3Q9UBR4 397 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms