RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RNF25Q96BH1 459 aaPredicted RBP15.3■□□□□ 0.04
LIMS3-201ENST00000437679 CENPTQ96BT3 561 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 IFT43Q96FT9 208 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 POLR1EQ9GZS1 481 aaKnown RBP15.3■□□□□ 0.04
LIMS3-201ENST00000437679 NOD2Q9HC29 1040 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 FTSJ1Q9UET6 329 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 PCDHGC4Q9Y5F7 938 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 ALG6Q9Y672 507 aa15.3■□□□□ 0.04
LIMS3-201ENST00000437679 ACACBO00763 2458 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 CFAP69A5D8W1 941 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 C3orf70A6NLC5 250 aaPredicted RBP15.29■□□□□ 0.04
LIMS3-201ENST00000437679 APOL1O14791 398 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 HTRA2O43464 458 aaPredicted RBP15.29■□□□□ 0.04
LIMS3-201ENST00000437679 TNFSF14O43557 240 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 PSTPIP1O43586 416 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 PRKCGP05129 697 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 C6P13671 934 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 LIG3P49916 1009 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 SEMG2Q02383 582 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 LRRC14Q15048 493 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 SLC9A4Q6AI14 798 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 RFX6Q8HWS3 928 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 CCDC13Q8IYE1 715 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 EID2Q8N6I1 236 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 HDAC11Q96DB2 347 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 CALR3Q96L12 384 aaKnown RBP15.29■□□□□ 0.04
LIMS3-201ENST00000437679 NSMCE3Q96MG7 304 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 BAG1Q99933 345 aaPredicted RBP15.29■□□□□ 0.04
LIMS3-201ENST00000437679 SEMA3CQ99985 751 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 GPR27Q9NS67 375 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 RBM22Q9NW64 420 aaKnown RBP eCLIP15.29■□□□□ 0.04
LIMS3-201ENST00000437679 DTLQ9NZJ0 730 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 IMPACTQ9P2X3 320 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 AMACRQ9UHK6 382 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 TFR2Q9UP52 801 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 COQ6Q9Y2Z9 468 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 HEY1Q9Y5J3 304 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 ARID1BQ8NFD5 2236 aaPredicted RBP15.29■□□□□ 0.04
LIMS3-201ENST00000437679 LRRK1Q38SD2 2015 aa15.29■□□□□ 0.04
LIMS3-201ENST00000437679 SPTY2D1-AS1A0A0U1RR47 76 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 GOLGA8CPA6NN73 597 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 GOLGA6L6A8MZA4 724 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 TOR1BO14657 336 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 SDC3O75056 442 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 LDOC1O95751 146 aaPredicted RBP15.28■□□□□ 0.04
LIMS3-201ENST00000437679 CPP00450 1065 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 CCNB1P14635 433 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 CES1P23141 567 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 IGFALSP35858 605 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 THOP1P52888 689 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 NAP1L1P55209 391 aaKnown RBP15.28■□□□□ 0.04
LIMS3-201ENST00000437679 PFN3P60673 137 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 YPEL5P62699 121 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 SLC10A2Q12908 348 aaPredicted RBP15.28■□□□□ 0.04
LIMS3-201ENST00000437679 PDE1CQ14123 709 aaPredicted RBP15.28■□□□□ 0.04
LIMS3-201ENST00000437679 PTK2BQ14289 1009 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 FZD2Q14332 565 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 HS1BP3Q53T59 392 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 ARMC12Q5T9G4 340 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 C11orf63Q6NUN7 778 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 DPPA4Q7L190 304 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 PLD5Q8N7P1 536 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 TP53I13Q8NBR0 393 aaPredicted RBP15.28■□□□□ 0.04
LIMS3-201ENST00000437679 SPC24Q8NBT2 197 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 SPOCK2Q92563 424 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 DNAJC28Q9NX36 388 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 PHTF1Q9UMS5 762 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.28■□□□□ 0.04
LIMS3-201ENST00000437679 TTLL3Q9Y4R7 772 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 CEP295Q9C0D2 2601 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 CHD8Q9HCK8 2581 aa15.28■□□□□ 0.04
LIMS3-201ENST00000437679 H3BM21 787 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 PPP1R12AO14974 1030 aaPredicted RBP15.27■□□□□ 0.04
LIMS3-201ENST00000437679 HYAL3O43820 417 aaPredicted RBP15.27■□□□□ 0.04
LIMS3-201ENST00000437679 ATXN1LP0C7T5 689 aaKnown RBP15.27■□□□□ 0.04
LIMS3-201ENST00000437679 ELFN1P0C7U0 828 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 KRT10P13645 584 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 HNRNPKP61978 463 aaKnown RBP eCLIP15.27■□□□□ 0.04
LIMS3-201ENST00000437679 TRAF2Q12933 501 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 RALGDSQ12967 914 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 TFDP2Q14188 446 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 PDK1Q15118 436 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 IRF4Q15306 451 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 MFSD7Q6UXD7 560 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 RAD9BQ6WBX8 426 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 KANSL1Q7Z3B3 1105 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 DAAM2Q86T65 1068 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 SLCO6A1Q86UG4 719 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 PARGQ86W56 976 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 NDUFAF2Q8N183 169 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 PNPLA1Q8N8W4 532 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 LRRN4Q8WUT4 740 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 ADAMTS14Q8WXS8 1223 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 CNDP2Q96KP4 475 aaKnown RBP15.27■□□□□ 0.04
LIMS3-201ENST00000437679 LGMNQ99538 433 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 GOLPH3Q9H4A6 298 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 MBNL1Q9NR56 388 aaKnown RBP15.27■□□□□ 0.04
LIMS3-201ENST00000437679 RAI2Q9Y5P3 530 aa15.27■□□□□ 0.04
LIMS3-201ENST00000437679 GOLGA4Q13439 2230 aaKnown RBP15.27■□□□□ 0.03
LIMS3-201ENST00000437679 COL5A1P20908 1838 aaPredicted RBP15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms