RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 RABL6Q3YEC7 729 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 DCLRE1AQ6PJP8 1040 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PTF1AQ7RTS3 328 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CROCCP3Q8IVE0 287 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ARHGEF19Q8IW93 802 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 TMEM192Q8IY95 271 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 MCRS1Q96EZ8 462 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 JSRP1Q96MG2 331 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 SLC38A3Q99624 504 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 KIAA1683Q9H0B3 1180 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 NKIRAS2Q9NYR9 191 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ERVW-1Q9UQF0 538 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 NR2E1Q9Y466 385 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 MYO5BQ9ULV0 1848 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 LACTBL1A8MY62 500 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PTGES3LE9PB15 166 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 F8VZ95 297 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 RECQL4O94761 1208 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 VAPBO95292 243 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CD86P42081 329 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ATXN1P54253 815 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 SRP54P61011 504 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 TNK2Q07912 1038 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PARP6Q2NL67 630 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PCID2Q5JVF3 399 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 N4BP2L1Q5TBK1 243 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 GET4Q7L5D6 327 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PSTKQ8IV42 348 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF483Q8TF39 744 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PRICKLE1Q96MT3 831 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 MTMR9Q96QG7 549 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ASF1AQ9Y294 204 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ZNF609O15014 1411 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 C1orf232A0A0U1RR37 186 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 C9J4A7 227 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 HAT1O14929 419 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 OR5F1O95221 314 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CMPK1P30085 196 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 GSSP48637 474 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 NUMBP49757 651 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 LAPTM5Q13571 262 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 TMPRSS11AQ6ZMR5 421 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 C17orf64Q86WR6 236 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 KIF2BQ8N4N8 673 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 AMER2Q8N7J2 671 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 OR6Y1Q8NGX8 325 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 HELQQ8TDG4 1101 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 FAM129BQ96TA1 746 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 BHLHE41Q9C0J9 482 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CDHR5Q9HBB8 845 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CRTAC1Q9NQ79 661 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PCDHGC3Q9UN70 934 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PLIN3O60664 434 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 UGT2B17O75795 530 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 DCKP27707 260 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 TRMT2AQ8IZ69 625 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 OFCC1Q8IZS5 231 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ETNPPLQ8TBG4 499 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 RNF31Q96EP0 1072 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 MORF4L1Q9UBU8 362 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 COG5Q9UP83 839 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 ERVK-11Q9UQG0 969 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 NOL4O94818 638 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 HGFP14210 728 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 LPOP22079 712 aaPredicted RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 AP3S2P59780 193 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PPP3R1P63098 170 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PYDC2Q56P42 97 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 TAPT1Q6NXT6 567 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 TREML1Q86YW5 311 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 DHRSXQ8N5I4 330 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 HNRNPLLQ8WVV9 542 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CLP1Q92989 425 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PCDH12Q9NPG4 1184 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 FBXO28Q9NVF7 368 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 HAO1Q9UJM8 370 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 NUDT5Q9UKK9 219 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 MYH2Q9UKX2 1941 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 DIP2AQ14689 1571 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 LOC100506127A0A0U1RQW1 187 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CLOCKO15516 846 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 LTA4HP09960 611 aaKnown RBP6.89□□□□□ -1.31
SCN1A-204ENST00000423058 CLCN5P51795 746 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 SP2Q02086 613 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 SH2D3CQ8N5H7 860 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 TAPBPLQ9BX59 468 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 PCBD2Q9H0N5 130 aa6.89□□□□□ -1.31
SCN1A-204ENST00000423058 H3BQF6 201 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 BTN3A3O00478 584 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 TRAFD1O14545 582 aaPredicted RBP6.88□□□□□ -1.31
SCN1A-204ENST00000423058 LAG3P18627 525 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 DNASE1L1P49184 302 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 OVGP1Q12889 678 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 POM121L1PQ3SYA9 428 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 PLPP4Q5VZY2 271 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ABRAXAS1Q6UWZ7 409 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 KDM7AQ6ZMT4 941 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 NUP54Q7Z3B4 507 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 ATG9AQ7Z3C6 839 aa6.88□□□□□ -1.31
SCN1A-204ENST00000423058 UNC93AQ86WB7 457 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms