RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 FUT11Q495W5 492 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 GPR158Q5T848 1215 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 TTC33Q6PID6 262 aaPredicted RBP21.1■□□□□ 0.97
CTCF-202ENST00000401394 SCIMPQ6UWF3 145 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 WDCPQ9H6R7 721 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 TIMMDC1Q9NPL8 285 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 SUCOQ9UBS9 1254 aaKnown RBP21.1■□□□□ 0.97
CTCF-202ENST00000401394 FBXW11Q9UKB1 542 aa21.1■□□□□ 0.97
CTCF-202ENST00000401394 TCRBV3S1A0A5B6 114 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 MSI1O43347 362 aaKnown RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 NPY2RP49146 381 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 SLC26A2P50443 739 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 BNIP3Q12983 259 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 TBCELQ5QJ74 424 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 BNIPLQ7Z465 357 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 SETD3Q86TU7 594 aaPredicted RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 TFAP2CQ92754 450 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 PAIP1Q9H074 479 aaKnown RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 MPP6Q9NZW5 540 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 SLAMF8Q9P0V8 285 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 CROTQ9UKG9 612 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 FBXO5Q9UKT4 447 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 XPOTO43592 962 aaKnown RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 RFTN1Q14699 578 aaPredicted RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 HERC3Q15034 1050 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 KLHL23Q8NBE8 558 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 FNDC8Q8TC99 324 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 TBL1YQ9BQ87 522 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 PAAF1Q9BRP4 392 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 MAGED1Q9Y5V3 778 aaPredicted RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 RNF103-CHMP3A0A140T963 221 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 H3BMM5 538 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 H2AFYO75367 372 aaKnown RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 CPB1P15086 417 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 SLC7A1P30825 629 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 CD300CQ08708 224 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 RABL3Q5HYI8 236 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 ALKAL1Q6UXT8 129 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 CMTR2Q8IYT2 770 aaKnown RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 LRRC52Q8N7C0 313 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 DCBLD1Q8N8Z6 715 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 SHCBP1Q8NEM2 672 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 VPS33AQ96AX1 596 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 DCPSQ96C86 337 aaKnown RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 CLK4Q9HAZ1 481 aaKnown RBP21.09■□□□□ 0.97
CTCF-202ENST00000401394 PNPLA3Q9NST1 481 aa21.09■□□□□ 0.97
CTCF-202ENST00000401394 KPNA6O60684 536 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 CAPN3P20807 821 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 RPS12P25398 132 aaKnown RBP21.08■□□□□ 0.97
CTCF-202ENST00000401394 VARSP26640 1264 aaKnown RBP21.08■□□□□ 0.97
CTCF-202ENST00000401394 CASP2P42575 452 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 GALNT2Q10471 571 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 IFNLR1Q8IU57 520 aaPredicted RBP21.08■□□□□ 0.97
CTCF-202ENST00000401394 DNAJB14Q8TBM8 379 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 GIPC3Q8TF64 312 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 PCED1BQ96HM7 432 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 ADAMTS10Q9H324 1103 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 TRAF6Q9Y4K3 522 aa21.08■□□□□ 0.97
CTCF-202ENST00000401394 HSPA1AP0DMV8 641 aaKnown RBP21.08■□□□□ 0.96
CTCF-202ENST00000401394 HSPA1BP0DMV9 641 aaKnown RBP21.08■□□□□ 0.96
CTCF-202ENST00000401394 POLR2IP36954 125 aaKnown RBP21.08■□□□□ 0.96
CTCF-202ENST00000401394 HSPA13P48723 471 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 TAF6P49848 677 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 SLC12A2P55011 1212 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 IHHQ14623 411 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 GEN1Q17RS7 908 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 ZIK1Q3SY52 487 aaPredicted RBP21.08■□□□□ 0.96
CTCF-202ENST00000401394 PYCR3Q53H96 274 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 TTC39CQ8N584 583 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 DNAJB3Q8WWF6 145 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 SLC2A13Q96QE2 648 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 HAUS8Q9BT25 410 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 TMEM181Q9P2C4 612 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 BCAP29Q9UHQ4 241 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 SBF1O95248 1867 aa21.08■□□□□ 0.96
CTCF-202ENST00000401394 MOCS2O96007 188 aaPredicted RBP21.07■□□□□ 0.96
CTCF-202ENST00000401394 PRSS56P0CW18 603 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 CDKN2DP55273 166 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 DAOAP59103 153 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 CREB5Q02930 508 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 UGT3A2Q3SY77 523 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 ACBD5Q5T8D3 534 aaPredicted RBP21.07■□□□□ 0.96
CTCF-202ENST00000401394 NAPEPLDQ6IQ20 393 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 BORAQ6PGQ7 559 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 GPR141Q7Z602 305 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 HDAC11Q96DB2 347 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 HNRNPABQ99729 332 aaKnown RBP21.07■□□□□ 0.96
CTCF-202ENST00000401394 AKTIPQ9H8T0 292 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 ANKRD6Q9Y2G4 727 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 BTBD19C9JJ37 291 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 HLA-DQB2P05538 268 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 APOA4P06727 396 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 ATP5F1P24539 256 aaPredicted RBP21.07■□□□□ 0.96
CTCF-202ENST00000401394 PLIN5Q00G26 463 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 STX5Q13190 355 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 TECRLQ5HYJ1 363 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 LDLRAP1Q5SW96 308 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 LYSMD3Q7Z3D4 306 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 LZTR1Q8N653 840 aa21.07■□□□□ 0.96
CTCF-202ENST00000401394 SCAMP5Q8TAC9 235 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms