RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 BPIFA1Q9NP55 256 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 TRHDEQ9UKU6 1024 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 STARD13Q9Y3M8 1113 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 NEMP2A6NFY4 417 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 SYN3O14994 580 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 HAUS5O94927 633 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 FSBPO95073 299 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 AHSGP02765 367 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 BMP1P13497 986 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 SLC6A4P31645 630 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 ALDH1A3P47895 512 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 SLC12A2P55011 1212 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 PRAMEP78395 509 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 NIPAL4Q0D2K0 466 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 USP41Q3LFD5 358 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 TEDDM1Q5T9Z0 273 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 ANKS3Q6ZW76 656 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 CRLF3Q8IUI8 442 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 SLC15A3Q8IY34 581 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 CARNMT1Q8N4J0 409 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 C10orf82Q8WW14 230 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 TSEN34Q9BSV6 310 aaKnown RBP10.89□□□□□ -0.67
NEDD9-201ENST00000379433 TM6SF2Q9BZW4 377 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 NMUR2Q9GZQ4 415 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 MRPL46Q9H2W6 279 aaKnown RBP10.89□□□□□ -0.67
NEDD9-201ENST00000379433 PHF24Q9UPV7 400 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 AAR2Q9Y312 384 aaKnown RBP10.89□□□□□ -0.67
NEDD9-201ENST00000379433 PCDHGC4Q9Y5F7 938 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 ARL5AQ9Y689 179 aa10.89□□□□□ -0.67
NEDD9-201ENST00000379433 ZMPSTE24O75844 475 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 MBL2P11226 248 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 CORO1AP31146 461 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 ROR2Q01974 943 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 SLC18A2Q05940 514 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 TWF1Q12792 350 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 UBAP2LQ14157 1087 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 CFAP157Q5JU67 520 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 NADSYN1Q6IA69 706 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 ARL14EPQ8N8R7 260 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 PPHLN1Q8NEY8 458 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 BRSK1Q8TDC3 778 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 BTN2A3PQ96KV6 586 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 TRIM62Q9BVG3 475 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 IL22Q9GZX6 179 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 ACTR5Q9H9F9 607 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 RUVBL2Q9Y230 463 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 UBA6A0AVT1 1052 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 SRRM3A6NNA2 597 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 MEI4A8MW99 385 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 ZNF487B1APH4 448 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 MTSS1O43312 755 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 COCHO43405 550 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 ANXA9O76027 345 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 OAS1P00973 400 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 HNRNPCP07910 306 aaKnown RBP eCLIP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 RAG1P15918 1043 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 HOXD12P35452 270 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 AIF1P55008 147 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 CSHL1Q14406 222 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 INO80DQ53TQ3 878 aaPredicted RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 NXNQ6DKJ4 435 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 CNSTQ6PJW8 725 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 SH2D5Q6ZV89 423 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 YTHDF3Q7Z739 585 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 EFCAB3Q8N7B9 438 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 HDAC10Q969S8 669 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 FUBP3Q96I24 572 aaKnown RBP eCLIP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 MRGPRX2Q96LB1 330 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 TSNARE1Q96NA8 513 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 RBM14Q96PK6 669 aaKnown RBP10.88□□□□□ -0.67
NEDD9-201ENST00000379433 VN1R3Q9BXE9 311 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 NEU3Q9UQ49 428 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 USP34Q70CQ2 3546 aa10.88□□□□□ -0.67
NEDD9-201ENST00000379433 FGF10O15520 208 aaPredicted RBP10.87□□□□□ -0.67
NEDD9-201ENST00000379433 GPR39O43194 453 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 SNAP91O60641 907 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 HSPA4LO95757 839 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 IGLV3-25P01717 112 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 MLNP12872 115 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 TACR2P21452 398 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 MAGEA6P43360 314 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 HCAR3P49019 387 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 SERPINB9P50453 376 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 CDK7P50613 346 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 CYP4F8P98187 520 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 IHHQ14623 411 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 SPANXN3Q5MJ09 141 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 RBM20Q5T481 1227 aaKnown RBP10.87□□□□□ -0.67
NEDD9-201ENST00000379433 ZNF697Q5TEC3 545 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 TMEM53Q6P2H8 277 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 SLC39A5Q6ZMH5 540 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 ZNF276Q8N554 614 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 MAB21L3Q8N8X9 362 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 SPPL2BQ8TCT7 592 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 PHF21BQ96EK2 531 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 MARK4Q96L34 752 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 CLSTN3Q9BQT9 956 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 ARL8BQ9NVJ2 186 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 PACSIN3Q9UKS6 424 aa10.87□□□□□ -0.67
NEDD9-201ENST00000379433 ZNF711Q9Y462 761 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms