RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ANKRD1Q15327 319 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 ZRSR1Q15695 479 aaKnown RBP2.27□□□□□ -2.05
VPS13A-206ENST00000376646 PAPPA-AS1Q5QFB9 102 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 MAP3K21Q5TCX8 1036 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 FAM69BQ5VUD6 431 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 ATG16L1Q676U5 607 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 GJB7Q6PEY0 223 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 MOB3CQ70IA8 216 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 MAATS1Q7Z4T9 603 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 DENND6AQ8IWF6 608 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 KBTBD3Q8NAB2 608 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 SORCS1Q8WY21 1168 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 TRIB2Q92519 343 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 NCSTNQ92542 709 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 ERGIC1Q969X5 290 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 RRP36Q96EU6 259 aaKnown RBP2.27□□□□□ -2.05
VPS13A-206ENST00000376646 CLSTN3Q9BQT9 956 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 SLC26A6Q9BXS9 759 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 LMAN2LQ9H0V9 348 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 RASSF1Q9NS23 344 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 SLC9A2Q9UBY0 812 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 SLC13A4Q9UKG4 626 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 KCNS2Q9ULS6 477 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 SLC45A1Q9Y2W3 748 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 SNX9Q9Y5X1 595 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 NFS1Q9Y697 457 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 ADGRF5Q8IZF2 1346 aa2.27□□□□□ -2.05
VPS13A-206ENST00000376646 VWA3AA6NCI4 1184 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 PRSS47A8MTI9 375 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 DHX16O60231 1041 aaKnown RBP2.26□□□□□ -2.05
VPS13A-206ENST00000376646 MBD4O95243 580 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 CNPP09543 421 aaKnown RBP2.26□□□□□ -2.05
VPS13A-206ENST00000376646 DAOP14920 347 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 LIFRP42702 1097 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 MCM2P49736 904 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 NLRP5P59047 1200 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 SLC18A3Q16572 532 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 STPG1Q5TH74 334 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 CES5AQ6NT32 575 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 BBS12Q6ZW61 710 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 ZNF441Q8N8Z8 693 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 MCPH1Q8NEM0 835 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 PPHLN1Q8NEY8 458 aaKnown RBP2.26□□□□□ -2.05
VPS13A-206ENST00000376646 GDPD5Q8WTR4 605 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 GPR63Q9BZJ6 419 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 UBN1Q9NPG3 1134 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 SMC4Q9NTJ3 1288 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 PCDHAC2Q9Y5I4 1007 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 NTN3O00634 580 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-206ENST00000376646 KLK10O43240 276 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 SP1P08047 785 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 HNRNPA1P09651 372 aaKnown RBP eCLIP2.26□□□□□ -2.05
VPS13A-206ENST00000376646 FMO4P31512 558 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 DDIT3P35638 169 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 NR1H2P55055 460 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 MPP1Q00013 466 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 ST3GAL1Q11201 340 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 SIM2Q14190 667 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-206ENST00000376646 EFHC1Q5JVL4 640 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 CBWD5Q5RIA9 395 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 ZNF449Q6P9G9 518 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 CCDC129Q6ZRS4 1044 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 C9orf139Q6ZV77 190 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 RSRC2Q7L4I2 434 aaKnown RBP2.26□□□□□ -2.05
VPS13A-206ENST00000376646 ANKRD44Q8N8A2 993 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 HSPH1Q92598 858 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 SKA1Q96BD8 255 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 RNF183Q96D59 192 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 BICD1Q96G01 975 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 CTNNAL1Q9UBT7 734 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 FBXO40Q9UH90 709 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 CD207Q9UJ71 328 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 ARHGAP26Q9UNA1 814 aa2.26□□□□□ -2.05
VPS13A-206ENST00000376646 PEX12O00623 359 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 ANP32CO43423 234 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 KRT36O76013 467 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 CLDN14O95500 239 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 PMS2P2O95744 297 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 CD4P01730 458 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 AMD1P17707 334 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 ELF1P32519 619 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 KRT9P35527 623 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 PGM1P36871 562 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 GEMIN4P57678 1058 aaKnown RBP2.25□□□□□ -2.05
VPS13A-206ENST00000376646 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS13A-206ENST00000376646 TDGQ13569 410 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 EFNB3Q15768 340 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 PLEKHO1Q53GL0 409 aaPredicted RBP2.25□□□□□ -2.05
VPS13A-206ENST00000376646 WDR45BQ5MNZ6 344 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 SLC9C2Q5TAH2 1124 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 CIARTQ8N365 385 aaPredicted RBP2.25□□□□□ -2.05
VPS13A-206ENST00000376646 IL17RCQ8NAC3 791 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 USP38Q8NB14 1042 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 SECTM1Q8WVN6 248 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 CD101Q93033 1021 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 C3orf30Q96M34 536 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP2.25□□□□□ -2.05
VPS13A-206ENST00000376646 NPLQ9BXD5 320 aaPredicted RBP2.25□□□□□ -2.05
VPS13A-206ENST00000376646 ZHX3Q9H4I2 956 aa2.25□□□□□ -2.05
VPS13A-206ENST00000376646 TTC12Q9H892 705 aaPredicted RBP2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms