RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 KLHL5Q96PQ7 755 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 RASSF1Q9NS23 344 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 ARHGAP20Q9P2F6 1191 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 IQSEC2Q5JU85 1478 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 CHKAP35790 457 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FOXD4Q12950 439 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 SLFN11Q7Z7L1 901 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 NECTIN3Q9NQS3 549 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 PCDHB16Q9NRJ7 776 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FAIMQ9NVQ4 179 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 MALT1Q9UDY8 824 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 ZNF232Q9UNY5 417 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 NRP2O60462 931 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 TPPPO94811 219 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 PRKACBP22694 351 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 PKNOX1P55347 436 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 KCTD19Q17RG1 926 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FNBP1LQ5T0N5 605 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 RPTNQ6XPR3 784 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 OAFQ86UD1 273 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 TMEM121Q9BTD3 319 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 AGPAT3Q9NRZ7 376 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 KBTBD13C9JR72 458 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 TADA2AO75478 443 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FDPSP14324 419 aaKnown RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 GNA12Q03113 381 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 RBM15BQ8NDT2 890 aaKnown RBP12.66□□□□□ -0.38
COL6A3-203ENST00000353578 MCOLN3Q8TDD5 553 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 SLC39A1Q9NY26 324 aa12.66□□□□□ -0.38
COL6A3-203ENST00000353578 FAM86C2PA6NEL3 165 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 STMND1H3BQB6 276 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 KRT33AO76009 404 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 MYL3P08590 195 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 CFL1P23528 166 aaKnown RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ATP6V0D1P61421 351 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ADAM8P78325 824 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 PWP1Q13610 501 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 LAPTM4BQ86VI4 370 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 MBOAT7Q96N66 472 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 CCDC32Q9BV29 185 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 DUSP10Q9Y6W6 482 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 BBOX1O75936 387 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 HOXD12P35452 270 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 CLCN5P51795 746 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 BIKQ13323 160 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 EZH2Q15910 746 aaKnown RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ZCCHC12Q6PEW1 402 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 METTL25Q8N6Q8 603 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 DNAJB3Q8WWF6 145 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ZCCHC2Q9C0B9 1178 aaKnown RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 TRIT1Q9H3H1 467 aaKnown RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 C2orf71A6NGG8 1288 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 GABBR2O75899 941 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 LTA4HP09960 611 aaKnown RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 FITM2Q8N6M3 262 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 MCCC1Q96RQ3 725 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 XKR3Q5GH77 459 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 DSELQ8IZU8 1212 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ZSWIM2Q8NEG5 633 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 FAM124BQ9H5Z6 455 aaPredicted RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 LSM7Q9UK45 103 aaKnown RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ALDH1A2O94788 518 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 NFICP08651 508 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 PANX3Q96QZ0 392 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ADAMTS10Q9H324 1103 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 FABP12A6NFH5 140 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 CCNT2O60583 730 aaKnown RBP12.65□□□□□ -0.38
COL6A3-203ENST00000353578 SLC22A3O75751 556 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 RGS6P49758 472 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 PTCHD4Q6ZW05 846 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 TERB2Q8NHR7 220 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 SETD4Q9NVD3 440 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 PLIN3O60664 434 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 PIGNO95427 931 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 ABL2P42684 1182 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 GYG1P46976 350 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 GABARAPL2P60520 117 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 FOXM1Q08050 763 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 WSCD2Q2TBF2 565 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 DCAF4L1Q3SXM0 396 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 GPR158Q5T848 1215 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 EFCAB6Q5THR3 1501 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 TRPS1Q9UHF7 1281 aa12.65□□□□□ -0.38
COL6A3-203ENST00000353578 FAM237BA0A1B0GVD1 139 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 TRAPPC13A5PLN9 417 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 C1orf196B1AJZ1 125 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 BMT2Q1RMZ1 405 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 C11orf91Q3C1V1 193 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 CDKL4Q5MAI5 379 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 ELMO1Q92556 727 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 HYLS1Q96M11 299 aa12.65□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF70Q9UC06 446 aaPredicted RBP12.65□□□□□ -0.39
COL6A3-203ENST00000353578 RBAK-RBAKDNI3L0D1 243 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PRODHO43272 600 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF410Q86VK4 478 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 RASGEF1CQ8N431 466 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PHC3Q8NDX5 983 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 GAL3ST3Q96A11 431 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 CYBBP04839 570 aa12.64□□□□□ -0.39
COL6A3-203ENST00000353578 PEX2P28328 305 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms