RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CCNHP51946 323 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 RAD51Q06609 339 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 MESP2Q0VG99 397 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 GALNT3Q14435 633 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 DPY19L3Q6ZPD9 716 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 RNF135Q8IUD6 432 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 LMNTD2Q8IXW0 634 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 PLCD3Q8N3E9 789 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 OR13J1Q8NGT2 312 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 HCAR2Q8TDS4 363 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 SCG3Q8WXD2 468 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 ZNF778Q96MU6 729 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 MCMBPQ9BTE3 642 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 RPP25Q9BUL9 199 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 CIPCQ9C0C6 399 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 TNKS2Q9H2K2 1166 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 MAGEE1Q9HCI5 957 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 NSMCE4AQ9NXX6 385 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 GTSE1Q9NYZ3 720 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 HECAQ9UBI9 543 aaPredicted RBP15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 STARD13Q9Y3M8 1113 aa15.01□□□□□ -0.01
CCDC88C-202ENST00000334448 POC1B-GALNT4F8VUJ3 575 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 NPC1O15118 1278 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 SLC7A4O43246 635 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 CRTAMO95727 393 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 ZNF140P52738 457 aaPredicted RBP15□□□□□ -0.01
CCDC88C-202ENST00000334448 PDE1BQ01064 536 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 ILF2Q12905 390 aaKnown RBP15□□□□□ -0.01
CCDC88C-202ENST00000334448 DNAJC3Q13217 504 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 ENPP2Q13822 863 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 TAF1AQ15573 450 aaPredicted RBP15□□□□□ -0.01
CCDC88C-202ENST00000334448 ESRP1Q6NXG1 681 aaKnown RBP15□□□□□ -0.01
CCDC88C-202ENST00000334448 KIAA0408Q6ZU52 694 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 Q6ZVU0 165 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 KDELC2Q7Z4H8 507 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 GALNT7Q86SF2 657 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 TRABD2AQ86V40 505 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 TTC30BQ8N4P2 665 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 PPM1NQ8N819 430 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 LPCAT1Q8NF37 534 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 STYXQ8WUJ0 223 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 DNASE1L2Q92874 299 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 MTBPQ96DY7 904 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 SGSM3Q96HU1 749 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 MCCC1Q96RQ3 725 aaPredicted RBP15□□□□□ -0.01
CCDC88C-202ENST00000334448 CDX2Q99626 313 aaPredicted RBP15□□□□□ -0.01
CCDC88C-202ENST00000334448 PHF7Q9BWX1 381 aaPredicted RBP15□□□□□ -0.01
CCDC88C-202ENST00000334448 OSBPL1AQ9BXW6 950 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 TMEM245Q9H330 911 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 ZFATQ9P243 1243 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 DKK3Q9UBP4 350 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 CTNNAL1Q9UBT7 734 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 PCDHB9Q9Y5E1 797 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 SPO11Q9Y5K1 396 aa15□□□□□ -0.01
CCDC88C-202ENST00000334448 A0A0J9YYE9 177 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 IQANK1A0A1B0GTG1 560 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CAPN8A6NHC0 703 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 SMIM23A6NLE4 172 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 C2CD4DB7Z1M9 353 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 KAT7O95251 611 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 TRBC1P01850 177 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CHRM1P11229 460 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 KCNA5P22460 613 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 GP5P40197 560 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 RECQLP46063 649 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CSE1LP55060 971 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 MAGOHP61326 146 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 ST8SIA6P61647 398 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 SMAD2Q15796 467 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CNGA3Q16281 694 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 SKIDA1Q1XH10 827 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 HNRNPA1L2Q32P51 320 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 TEDDM1Q5T9Z0 273 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 LGSNQ5TDP6 509 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 BRAT1Q6PJG6 821 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CES3Q6UWW8 571 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 KDM7AQ6ZMT4 941 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 NUDT18Q6ZVK8 323 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 TAOK1Q7L7X3 1001 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 EXOC3L1Q86VI1 746 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 KCNMB4Q86W47 210 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CAMK1DQ8IU85 385 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 UNC5BQ8IZJ1 945 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CYP4X1Q8N118 509 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 ARFGAP2Q8N6H7 521 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CYB5D2Q8WUJ1 264 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 UCMAQ8WVF2 138 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 SORCS1Q8WY21 1168 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 RMDN1Q96DB5 314 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 CPNE1Q99829 537 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 HEPHQ9BQS7 1158 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 FAM167BQ9BTA0 163 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 MFSD1Q9H3U5 465 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 SUV39H2Q9H5I1 410 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 BRD9Q9H8M2 597 aa14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 SSU72Q9NP77 194 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 THAP10Q9P2Z0 257 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 NOVA2Q9UNW9 492 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-202ENST00000334448 PLA2G4CQ9UP65 541 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms