RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 TTI2Q6NXR4 508 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 CCDC54Q8NEL0 328 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 MTFMTQ96DP5 389 aaKnown RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 RHOBTB2Q9BYZ6 727 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 CD248Q9HCU0 757 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 SETD4Q9NVD3 440 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 KMOO15229 486 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ERBB2P04626 1255 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 TPH1P17752 444 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 FAM153CQ494X1 144 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 NOA1Q8NC60 698 aaKnown RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 SENP6Q9GZR1 1112 aaPredicted RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 PTGFRNQ9P2B2 879 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 A0A087X0B3 334 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 RSL1D1O76021 490 aaKnown RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 SEZ6Q53EL9 994 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 OR52K1Q8NGK4 314 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 TAS1R2Q8TE23 839 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PYDC1Q8WXC3 89 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PTPRHQ9HD43 1115 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PNPLA3Q9NST1 481 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 IKZF3Q9UKT9 509 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 CHKBQ9Y259 395 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 UBOX5O94941 541 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 RPS6KA3P51812 740 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ZNF143P52747 638 aaPredicted RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 DPYSQ14117 519 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 RTL4Q6ZR62 310 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 DPF2Q92785 391 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 EFHD2Q96C19 240 aaPredicted RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 IDI2Q9BXS1 227 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.37□□□□□ -0.91
CUX1-201ENST00000292535 MTF2Q9Y483 593 aaPredicted RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 IQSEC2Q5JU85 1478 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 FAM228BP0C875 321 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 OLR1P78380 273 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 MEA1Q16626 185 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 HECTD3Q5T447 861 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 CACUL1Q86Y37 369 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 HSFY1Q96LI6 401 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 CPA4Q9UI42 421 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 RIIAD1A6NNX1 92 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ARP10275 920 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PSMB4P28070 264 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ASMTP46597 345 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 ERVK-9P63128 1117 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 S100ZQ8WXG8 99 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 PPCDCQ96CD2 204 aa9.37□□□□□ -0.91
CUX1-201ENST00000292535 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.37□□□□□ -0.918e-7■■■□□ 18
CUX1-201ENST00000292535 RSL24D1Q9UHA3 163 aaKnown RBP9.37□□□□□ -0.91
CUX1-201ENST00000292535 MT-CO1P00395 513 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 ALADP13716 330 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 CDC25CP30307 473 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 GPALPP1Q8IXQ4 340 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 LRRC17Q8N6Y2 441 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 PECAM1P16284 738 aaPredicted RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 DPYSL3Q14195 570 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 PUS10Q3MIT2 529 aaKnown RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 STXBP5Q5T5C0 1151 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 CPTPQ5TA50 214 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 FERD3LQ96RJ6 166 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 WDR12Q9GZL7 423 aaKnown RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 MTFR1LQ9H019 292 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 KIAA1522Q9P206 1035 aaPredicted RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 TRBC1P01850 177 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 DNTTP04053 509 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 LGALS2P05162 132 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TFPIP10646 304 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 CDH4P55283 916 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 AMIGO1Q86WK6 493 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 VPS45Q9NRW7 570 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 EXD2Q9NVH0 621 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SHANK1Q9Y566 2161 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TLX3O43711 291 aaPredicted RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 LCA5LO95447 670 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 APOC1P02654 83 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 MIPP30301 263 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 IQSEC1Q6DN90 963 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 DENND1CQ8IV53 801 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SCUBE3Q8IX30 993 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 CPA6Q8N4T0 437 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 GRIP2Q9C0E4 1043 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SEMA6BQ9H3T3 888 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TMEM134Q9H6X4 195 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 CST1P01037 141 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 XKR4Q5GH76 650 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 ABRAXAS1Q6UWZ7 409 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 HELQQ8TDG4 1101 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 COPS7AQ9UBW8 275 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 LRIG2O94898 1065 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 ATG14Q6ZNE5 492 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 TSHZ1Q6ZSZ6 1077 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 PTCD2Q8WV60 388 aaKnown RBP9.36□□□□□ -0.91
CUX1-201ENST00000292535 FAR1Q8WVX9 515 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 OR52E6Q96RD3 313 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 CST11Q9H112 138 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 PGK1P00558 417 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 SDC2P34741 201 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 DET1Q7L5Y6 550 aa9.36□□□□□ -0.91
CUX1-201ENST00000292535 FAM98AQ8NCA5 519 aaKnown RBP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms