RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 FBXW5Q969U6 566 aa9.28□□□□□ -0.92
PDGFC-201ENST00000274071 C6orf50Q9HD87 102 aa9.28□□□□□ -0.92
PDGFC-201ENST00000274071 TAS2R7Q9NYW3 318 aa9.28□□□□□ -0.92
PDGFC-201ENST00000274071 ZNF175Q9Y473 711 aa9.28□□□□□ -0.92
PDGFC-201ENST00000274071 UBE4BO95155 1302 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 HMX2A2RU54 273 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 KRT87PA6NCN2 255 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 OLFM2O95897 454 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 SERPINE1P05121 402 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 DDCP20711 480 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 SHMT1P34896 483 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 NR2C2P49116 596 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 INCA1Q0VD86 236 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 TBRG1Q3YBR2 411 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 HYIQ5T013 277 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 DPY19L3Q6ZPD9 716 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 USP51Q70EK9 711 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 RHOT1Q8IXI2 618 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 KATNAL2Q8IYT4 538 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 OR4M2Q8NGB6 313 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 NPAS2Q99743 824 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 VPS33BQ9H267 617 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 CPVLQ9H3G5 476 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 FAM105AQ9NUU6 356 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 FBXO28Q9NVF7 368 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 FBXL12Q9NXK8 326 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 BAG5Q9UL15 447 aa9.27□□□□□ -0.92
PDGFC-201ENST00000274071 ZBBXA8MT70 800 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 POLRMTO00411 1230 aaKnown RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 CYP3A5P20815 502 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 RFX1P22670 979 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ALDH4A1P30038 563 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 GABRB2P47870 512 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 SLC12A3P55017 1021 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 MPP1Q00013 466 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 UBE3AQ05086 875 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 RFTN1Q14699 578 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 DPY19L1Q2PZI1 675 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 PLA2G4EQ3MJ16 856 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 GRTP1Q5TC63 336 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 LGSNQ5TDP6 509 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 MROH9Q5TGP6 573 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 SYCE2Q6PIF2 218 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ZNF704Q6ZNC4 412 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 SVOPQ8N4V2 548 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 GLB1L3Q8NCI6 653 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 PNMA1Q8ND90 353 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 OR13J1Q8NGT2 312 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 DYNC2LI1Q8TCX1 351 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 HAS1Q92839 578 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 NKD2Q969F2 451 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 FYTTD1Q96QD9 318 aaKnown RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 APBA2Q99767 749 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 TEX13BQ9BXU2 312 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ROGDIQ9GZN7 287 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ZNF556Q9HAH1 456 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 FAM8A1Q9UBU6 413 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 GGA1Q9UJY5 639 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 EMCNQ9ULC0 261 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 RNF112Q9ULX5 631 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 PABPN1LA6NDY0 278 aaKnown RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 SAGE2PA6NJ88 616 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ZNF98A6NK75 572 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 H0YC42 278 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 SERPINI2O75830 405 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 GCNT3O95395 438 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ITGAVP06756 1048 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 RETP07949 1114 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 CYP2A6P11509 494 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 POU3F3P20264 500 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 MAGEA11P43364 429 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 GDF10P55107 478 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 TPD52P55327 224 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ZNF267Q14586 743 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 CBX2Q14781 532 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 BMT2Q1RMZ1 405 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 SBK1Q52WX2 424 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 PPP1R26Q5T8A7 1209 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 ACAD10Q6JQN1 1059 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 CATSPER4Q7RTX7 472 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 HORMAD1Q86X24 394 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 C10orf107Q8IVU9 208 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 LRRC71Q8N4P6 559 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 PCDH20Q8N6Y1 951 aaKnown RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 PJA1Q8NG27 643 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 VANGL1Q8TAA9 524 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 TOP1MTQ969P6 601 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 UCK2Q9BZX2 261 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 SLIRPQ9GZT3 109 aaKnown RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 WDR55Q9H6Y2 383 aaPredicted RBP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 OAZ3Q9UMX2 235 aa9.27□□□□□ -0.93
PDGFC-201ENST00000274071 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.27□□□□□ -0.93
PDGFC-201ENST00000274071 LAMB1P07942 1786 aa9.26□□□□□ -0.93
PDGFC-201ENST00000274071 TRAV6A0A075B6T7 132 aa9.26□□□□□ -0.93
PDGFC-201ENST00000274071 H3BMM5 538 aa9.26□□□□□ -0.93
PDGFC-201ENST00000274071 ZBTB39O15060 712 aa9.26□□□□□ -0.93
PDGFC-201ENST00000274071 PSTPIP1O43586 416 aa9.26□□□□□ -0.93
PDGFC-201ENST00000274071 GRIN3BO60391 1043 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms