RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 BIRC3Q13489 604 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 SPA17Q15506 151 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 RBM23Q86U06 439 aaKnown RBP5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 ERICH1Q86X53 443 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 PHC3Q8NDX5 983 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 KLHL6Q8WZ60 621 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 TCF25Q9BQ70 676 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 UTS2RQ9UKP6 389 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 DYNC1I1O14576 645 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 TRAPPC3O43617 180 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 AP2A1O95782 977 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 ERVK-10P10266 1014 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 PTK2BQ14289 1009 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 C10orf76Q5T2E6 689 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 DENND5BQ6ZUT9 1274 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 GPR149Q86SP6 731 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 MON1AQ86VX9 555 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 RALGPS2Q86X27 583 aaPredicted RBP5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 ANKMY2Q8IV38 441 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 PLCD3Q8N3E9 789 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 KDM1BQ8NB78 822 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 CCT6BQ92526 530 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 GBA3Q9H227 469 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 ACSS3Q9H6R3 686 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 TMEM39AQ9NV64 488 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 STARD13Q9Y3M8 1113 aa5.68□□□□□ -1.5
TOPBP1-201ENST00000260810 ADAM11O75078 769 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 KCNA4P22459 653 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 AOAHP28039 575 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 HOXA9P31269 272 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 AP3M2P53677 418 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 PPP2CBP62714 309 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 PPP2CAP67775 309 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 FRG1Q14331 258 aaKnown RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 CROCCP2Q86T23 111 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 RHOT1Q8IXI2 618 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 LRRC43Q8N309 656 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 MICALL1Q8N3F8 863 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 HSPH1Q92598 858 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 ERLEC1Q96DZ1 483 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 PPM1MQ96MI6 270 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 ALS2CR12Q96Q35 445 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 KLC4Q9NSK0 619 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 ARHGAP26Q9UNA1 814 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 USP9YO00507 2555 aaPredicted RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 SLC1A2P43004 574 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 MATR3P43243 847 aaKnown RBP eCLIP5.67□□□□□ -1.52e-6■■□□□ 13.1
TOPBP1-201ENST00000260810 VASPP50552 380 aaPredicted RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 CTBSQ01459 385 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 CRYMQ14894 314 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 RETREG3Q86VR2 466 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 CAMK1DQ8IU85 385 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 ZBTB8OSQ8IWT0 167 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 SNX31Q8N9S9 440 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 UHMK1Q8TAS1 419 aaKnown RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 TCEAL2Q9H3H9 227 aaPredicted RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 CPQQ9Y646 472 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 A8MUI8 341 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 FBP2O00757 339 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 CHRNGP07510 517 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 GABRA4P48169 554 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 ECT2LQ008S8 904 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 BMPR2Q13873 1038 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 TCHHL1Q5QJ38 904 aaPredicted RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 C10orf82Q8WW14 230 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 SGSM3Q96HU1 749 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 TSPAN18Q96SJ8 248 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 AP5M1Q9H0R1 490 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 GSTO2Q9H4Y5 243 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 PCDH9Q9HC56 1237 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 DDIT4Q9NX09 232 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 FCF1Q9Y324 198 aaKnown RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 FAM186AA6NE01 2351 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 PGRMC1O00264 195 aaKnown RBP5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 CHRNB1P11230 501 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 TUBB2AQ13885 445 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 C16orf72Q14CZ0 275 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 EGFLAMQ63HQ2 1017 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 PMEPA1Q969W9 287 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 VTI1AQ96AJ9 217 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 COQ10AQ96MF6 247 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 TUBB2BQ9BVA1 445 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 WHRNQ9P202 907 aa5.67□□□□□ -1.5
TOPBP1-201ENST00000260810 TK2O00142 265 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 MATN3O15232 486 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 ERGP11308 486 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 CORO1AP31146 461 aaKnown RBP5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 MAP7Q14244 749 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 PIGHQ14442 188 aaPredicted RBP5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 FXNQ16595 210 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 HENMT1Q5T8I9 393 aaKnown RBP5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 KAZNQ674X7 775 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 DPY19L3Q6ZPD9 716 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 DENND1CQ8IV53 801 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 KBTBD2Q8IY47 623 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 NAT16Q8N8M0 369 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 MAB21L3Q8N8X9 362 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 TMEM35BQ8NCS4 154 aa5.66□□□□□ -1.5
TOPBP1-201ENST00000260810 CCL4L1Q8NHW4 92 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms