RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 TRIM6Q9C030 488 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-221ENST00000641996 SMAPO00193 183 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 MAP2K2P36507 400 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 MNAT1P51948 309 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 ANKRD20A12PQ8NF67 263 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 CHRM1P11229 460 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-221ENST00000641996 RBM5P52756 815 aaKnown RBP eCLIP4.26□□□□□ -1.73
SCN1A-221ENST00000641996 PRKG1Q13976 671 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 PMM1Q92871 262 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 SPATA32Q96LK8 384 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 MAGEC2Q9UBF1 373 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-221ENST00000641996 RPUSD2Q8IZ73 545 aaKnown RBP4.26□□□□□ -1.73
SCN1A-221ENST00000641996 RNF214Q8ND24 703 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 ZC3H15Q8WU90 426 aaKnown RBP4.26□□□□□ -1.73
SCN1A-221ENST00000641996 SUFUQ9UMX1 484 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 ATP6V1E1P36543 226 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 ZNF131P52739 623 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 CTR9Q6PD62 1173 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 GIGYF2Q6Y7W6 1299 aaKnown RBP4.26□□□□□ -1.73
SCN1A-221ENST00000641996 CCDC125Q86Z20 511 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 WAPLQ7Z5K2 1190 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 HS6ST3Q8IZP7 471 aa4.26□□□□□ -1.73
SCN1A-221ENST00000641996 IRF6O14896 467 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 BRD3Q15059 726 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 PAGR1Q9BTK6 254 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 IKBKGQ9Y6K9 419 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 MYH10P35580 1976 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 IRX5P78411 483 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 INCENPQ9NQS7 918 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 GOLGA6L19H0YKK7 550 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 PRPHP41219 470 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 TBC1D31Q96DN5 1066 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 ATG3Q9NT62 314 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 HSP90AB1P08238 724 aaKnown RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 HOOK3Q86VS8 718 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 VMP1Q96GC9 406 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 CENPOQ9BU64 300 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 GOLGA4Q13439 2230 aaKnown RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 AIMP1Q12904 312 aaKnown RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 DNAJC21Q5F1R6 531 aaKnown RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 ERCC4Q92889 916 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 CXorf56Q9H5V9 222 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 EVLQ9UI08 416 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 ARMC3Q5W041 872 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 UIMC1Q96RL1 719 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 RAI14Q9P0K7 980 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 SPDYE4A6NLX3 237 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 CDC5LQ99459 802 aaKnown RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 IVNS1ABPQ9Y6Y0 642 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 TSNAXIP1Q2TAA8 658 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 GIPC2Q8TF65 315 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 FAM210AQ96ND0 272 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 CSPG5O95196 566 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 PPP2R5CQ13362 524 aa4.25□□□□□ -1.73
SCN1A-221ENST00000641996 CCDC85AQ96PX6 553 aaPredicted RBP4.25□□□□□ -1.73
SCN1A-221ENST00000641996 ERCC3P19447 782 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 PRPF4BQ13523 1007 aaKnown RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 ZKSCAN8Q15776 578 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 CAPN15O75808 1086 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 NF2P35240 595 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 NBPF3Q9H094 633 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 KSR2Q6VAB6 950 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 SFMBT1Q9UHJ3 866 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 CTAGE5O15320 804 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 ECEL1O95672 775 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 POLR2FP61218 127 aaKnown RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 UHMK1Q8TAS1 419 aaKnown RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 CARD10Q9BWT7 1032 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 KDM4CQ9H3R0 1056 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 HSPA5P11021 654 aaKnown RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 NAT1P18440 290 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 TTLL12Q14166 644 aaPredicted RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 WWC2Q6AWC2 1192 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 CCDC180Q9P1Z9 1646 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 KIAA0754O94854 1291 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 TPM1P09493 284 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 TSR1Q2NL82 804 aaKnown RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 TEX35Q5T0J7 233 aa4.24□□□□□ -1.73
SCN1A-221ENST00000641996 CHCHD3Q9NX63 227 aaKnown RBP4.24□□□□□ -1.73
SCN1A-221ENST00000641996 GIGYF1O75420 1035 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 SESN3P58005 492 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 OLFML1Q6UWY5 402 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 ZSWIM4Q9H7M6 989 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 ARIH1Q9Y4X5 557 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 S100BP04271 92 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 LLGL2Q6P1M3 1020 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 SNX32Q86XE0 403 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 MRRFQ96E11 262 aaKnown RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 MYO10Q9HD67 2058 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 CCDC88CQ9P219 2028 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 SPATA17Q96L03 361 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 PRR12Q9ULL5 1215 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 ITM2BQ9Y287 266 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 STK3Q13188 491 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 TTC31Q49AM3 519 aaPredicted RBP4.23□□□□□ -1.73
SCN1A-221ENST00000641996 MICALCLQ6ZW33 695 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 TRIM17Q9Y577 477 aa4.23□□□□□ -1.73
SCN1A-221ENST00000641996 PARNO95453 639 aaKnown RBP4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms