RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 PEAK1Q9H792 1746 aa25.56■■□□□ 1.68
CIITA-215ENST00000637439 AKAP12Q02952 1782 aa25.56■■□□□ 1.68
CIITA-215ENST00000637439 LRRC37A3O60309 1634 aa25.55■■□□□ 1.68
CIITA-215ENST00000637439 NEUROD1Q13562 356 aa25.55■■□□□ 1.68
CIITA-215ENST00000637439 ARHGEF25Q86VW2 580 aa25.55■■□□□ 1.68
CIITA-215ENST00000637439 AXIN2Q9Y2T1 843 aa25.54■■□□□ 1.68
CIITA-215ENST00000637439 RGPD3A6NKT7 1758 aaPredicted RBP25.53■■□□□ 1.68
CIITA-215ENST00000637439 RGPD4Q7Z3J3 1758 aa25.53■■□□□ 1.68
CIITA-215ENST00000637439 WNK3Q9BYP7 1800 aa25.52■■□□□ 1.68
CIITA-215ENST00000637439 PLSCR1O15162 318 aa25.52■■□□□ 1.68
CIITA-215ENST00000637439 SBF2Q86WG5 1849 aa25.51■■□□□ 1.67
CIITA-215ENST00000637439 KTN1Q86UP2 1357 aaKnown RBP25.5■■□□□ 1.67
CIITA-215ENST00000637439 CARD10Q9BWT7 1032 aa25.5■■□□□ 1.67
CIITA-215ENST00000637439 BCL11BQ9C0K0 894 aaPredicted RBP25.5■■□□□ 1.67
CIITA-215ENST00000637439 CSB-PGBD3P0DP91 1061 aa25.49■■□□□ 1.67
CIITA-215ENST00000637439 BCL9O00512 1426 aa25.48■■□□□ 1.67
CIITA-215ENST00000637439 SBNO2Q9Y2G9 1366 aa25.48■■□□□ 1.67
CIITA-215ENST00000637439 SPON1Q9HCB6 807 aa25.48■■□□□ 1.67
CIITA-215ENST00000637439 RGPD5Q99666 1765 aa25.48■■□□□ 1.67
CIITA-215ENST00000637439 ABCC6O95255 1503 aa25.47■■□□□ 1.67
CIITA-215ENST00000637439 SOX12O15370 315 aa25.47■■□□□ 1.67
CIITA-215ENST00000637439 MARCH10Q8NA82 808 aaPredicted RBP25.46■■□□□ 1.67
CIITA-215ENST00000637439 NFAT5O94916 1531 aa25.46■■□□□ 1.67
CIITA-215ENST00000637439 MON2Q7Z3U7 1717 aa25.45■■□□□ 1.66
CIITA-215ENST00000637439 CCDC7Q96M83 1385 aa25.44■■□□□ 1.66
CIITA-215ENST00000637439 KCNQ2O43526 872 aa25.44■■□□□ 1.66
CIITA-215ENST00000637439 PPP1R1BQ9UD71 204 aaPredicted RBP25.44■■□□□ 1.66
CIITA-215ENST00000637439 EXOC5O00471 708 aa25.43■■□□□ 1.66
CIITA-215ENST00000637439 USP31Q70CQ4 1352 aa25.42■■□□□ 1.66
CIITA-215ENST00000637439 CARD11Q9BXL7 1154 aa25.41■■□□□ 1.66
CIITA-215ENST00000637439 USP54Q70EL1 1684 aa25.39■■□□□ 1.66
CIITA-215ENST00000637439 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.39■■□□□ 1.66
CIITA-215ENST00000637439 PTF1AQ7RTS3 328 aa25.38■■□□□ 1.65
CIITA-215ENST00000637439 HDGFL2Q7Z4V5 671 aaPredicted RBP25.38■■□□□ 1.65
CIITA-215ENST00000637439 NINLQ9Y2I6 1382 aa25.37■■□□□ 1.65
CIITA-215ENST00000637439 TNS2Q63HR2 1409 aa25.37■■□□□ 1.65
CIITA-215ENST00000637439 DCAF8L1A6NGE4 600 aa25.36■■□□□ 1.65
CIITA-215ENST00000637439 TMC1Q8TDI8 760 aa25.36■■□□□ 1.65
CIITA-215ENST00000637439 ANO8Q9HCE9 1232 aaPredicted RBP25.36■■□□□ 1.65
CIITA-215ENST00000637439 PROM2Q8N271 834 aa25.35■■□□□ 1.65
CIITA-215ENST00000637439 CD163L1Q9NR16 1453 aa25.34■■□□□ 1.65
CIITA-215ENST00000637439 NME9Q86XW9 330 aa25.34■■□□□ 1.65
CIITA-215ENST00000637439 ERBB3P21860 1342 aa25.34■■□□□ 1.65
CIITA-215ENST00000637439 CASZ1Q86V15 1759 aa25.33■■□□□ 1.65
CIITA-215ENST00000637439 TXNRD1Q16881 649 aa25.33■■□□□ 1.65
CIITA-215ENST00000637439 EDC4Q6P2E9 1401 aaKnown RBP25.33■■□□□ 1.65
CIITA-215ENST00000637439 PUS7Q96PZ0 661 aaKnown RBP25.33■■□□□ 1.65
CIITA-215ENST00000637439 TERF2IPQ9NYB0 399 aa25.33■■□□□ 1.65
CIITA-215ENST00000637439 LTN1O94822 1766 aa25.32■■□□□ 1.64
CIITA-215ENST00000637439 NLRP2Q9NX02 1062 aa25.32■■□□□ 1.64
CIITA-215ENST00000637439 SLC12A5Q9H2X9 1139 aa25.31■■□□□ 1.64
CIITA-215ENST00000637439 STK32BQ9NY57 414 aa25.31■■□□□ 1.64
CIITA-215ENST00000637439 TONSLQ96HA7 1378 aa25.31■■□□□ 1.64
CIITA-215ENST00000637439 IL2RBP14784 551 aa25.3■■□□□ 1.64
CIITA-215ENST00000637439 NHSQ6T4R5 1651 aa25.29■■□□□ 1.64
CIITA-215ENST00000637439 YY1P25490 414 aa25.28■■□□□ 1.64
CIITA-215ENST00000637439 ANKRD24Q8TF21 1146 aa25.28■■□□□ 1.64
CIITA-215ENST00000637439 SLC15A2Q16348 729 aa25.27■■□□□ 1.64
CIITA-215ENST00000637439 A0A1W2PP64 1363 aa25.26■■□□□ 1.63
CIITA-215ENST00000637439 SLC24A1O60721 1099 aa25.25■■□□□ 1.63
CIITA-215ENST00000637439 ZBTB7AO95365 584 aa25.25■■□□□ 1.63
CIITA-215ENST00000637439 PDGFDQ9GZP0 370 aaPredicted RBP25.25■■□□□ 1.63
CIITA-215ENST00000637439 ACSBG1Q96GR2 724 aa25.23■■□□□ 1.63
CIITA-215ENST00000637439 PTGER2P43116 358 aa25.21■■□□□ 1.63
CIITA-215ENST00000637439 IP6K1Q92551 441 aa25.21■■□□□ 1.63
CIITA-215ENST00000637439 FAM208AQ9UK61 1670 aaKnown RBP25.2■■□□□ 1.63
CIITA-215ENST00000637439 MTFR1LQ9H019 292 aa25.2■■□□□ 1.62
CIITA-215ENST00000637439 ATF5Q9Y2D1 282 aaPredicted RBP25.2■■□□□ 1.62
CIITA-215ENST00000637439 MYOM1P52179 1685 aa25.19■■□□□ 1.62
CIITA-215ENST00000637439 BTAF1O14981 1849 aa25.19■■□□□ 1.62
CIITA-215ENST00000637439 COG3Q96JB2 828 aa25.17■■□□□ 1.62
CIITA-215ENST00000637439 TESK2Q96S53 571 aa25.17■■□□□ 1.62
CIITA-215ENST00000637439 PAPPAQ13219 1627 aa25.15■■□□□ 1.62
CIITA-215ENST00000637439 ST20-MTHFSA0A0A6YYL1 179 aa25.15■■□□□ 1.62
CIITA-215ENST00000637439 KAT6BQ8WYB5 2073 aa25.15■■□□□ 1.62
CIITA-215ENST00000637439 LTV1Q96GA3 475 aaPredicted RBP25.13■■□□□ 1.61
CIITA-215ENST00000637439 DDX54Q8TDD1 881 aaKnown RBP25.12■■□□□ 1.61
CIITA-215ENST00000637439 AMPHP49418 695 aa25.11■■□□□ 1.61
CIITA-215ENST00000637439 SLC27A3Q5K4L6 730 aa25.11■■□□□ 1.61
CIITA-215ENST00000637439 SGIP1Q9BQI5 828 aa25.11■■□□□ 1.61
CIITA-215ENST00000637439 SYT17Q9BSW7 474 aa25.11■■□□□ 1.61
CIITA-215ENST00000637439 FHDC1Q9C0D6 1143 aaPredicted RBP25.11■■□□□ 1.61
CIITA-215ENST00000637439 MAP3K19Q56UN5 1328 aa25.11■■□□□ 1.61
CIITA-215ENST00000637439 HOXC9P31274 260 aa25.1■■□□□ 1.61
CIITA-215ENST00000637439 ANKRD36BQ8N2N9 1353 aa25.09■■□□□ 1.61
CIITA-215ENST00000637439 LRRC4BQ9NT99 713 aa25.08■■□□□ 1.61
CIITA-215ENST00000637439 ZNF827Q17R98 1081 aa25.07■■□□□ 1.6
CIITA-215ENST00000637439 ARXQ96QS3 562 aa25.07■■□□□ 1.6
CIITA-215ENST00000637439 RTL1A6NKG5 1358 aa25.06■■□□□ 1.6
CIITA-215ENST00000637439 ZCRB1Q8TBF4 217 aaKnown RBP25.05■■□□□ 1.6
CIITA-215ENST00000637439 SLC16A10Q8TF71 515 aa25.05■■□□□ 1.6
CIITA-215ENST00000637439 QSER1Q2KHR3 1735 aa25.04■■□□□ 1.6
CIITA-215ENST00000637439 TMF1P82094 1093 aa25.04■■□□□ 1.6
CIITA-215ENST00000637439 AKT1S1Q96B36 256 aa25.04■■□□□ 1.6
CIITA-215ENST00000637439 SYTL4Q96C24 671 aaPredicted RBP25.04■■□□□ 1.6
CIITA-215ENST00000637439 MAP3K5Q99683 1374 aa25.04■■□□□ 1.6
CIITA-215ENST00000637439 PRIM1P49642 420 aaKnown RBP25.03■■□□□ 1.6
CIITA-215ENST00000637439 FBLN1P23142 703 aa25.02■■□□□ 1.6
CIITA-215ENST00000637439 DOT1LQ8TEK3 1739 aa25.01■■□□□ 1.59
CIITA-215ENST00000637439 RGPD2P0DJD1 1756 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms