RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 HOXC9P31274 260 aa24.36■■□□□ 1.49
CLN3-254ENST00000637050 PDE3BQ13370 1112 aa24.36■■□□□ 1.49
CLN3-254ENST00000637050 PNNQ9H307 717 aaKnown RBP24.36■■□□□ 1.49
CLN3-254ENST00000637050 ZNF521Q96K83 1311 aa24.35■■□□□ 1.49
CLN3-254ENST00000637050 RGPD1P0DJD0 1748 aa24.34■■□□□ 1.49
CLN3-254ENST00000637050 TCP11L2Q8N4U5 519 aa24.34■■□□□ 1.49
CLN3-254ENST00000637050 RSPH6AQ9H0K4 717 aa24.34■■□□□ 1.49
CLN3-254ENST00000637050 NCBP3Q53F19 620 aaKnown RBP24.33■■□□□ 1.49
CLN3-254ENST00000637050 ARHGEF25Q86VW2 580 aa24.33■■□□□ 1.49
CLN3-254ENST00000637050 IP6K1Q92551 441 aa24.32■■□□□ 1.48
CLN3-254ENST00000637050 CRYBG1Q9Y4K1 1723 aa24.32■■□□□ 1.48
CLN3-254ENST00000637050 ROBO1Q9Y6N7 1651 aa24.31■■□□□ 1.48
CLN3-254ENST00000637050 HMOX1P09601 288 aa24.3■■□□□ 1.48
CLN3-254ENST00000637050 PRKAR2BP31323 418 aa24.29■■□□□ 1.48
CLN3-254ENST00000637050 MAPK8IP3Q9UPT6 1336 aa24.29■■□□□ 1.48
CLN3-254ENST00000637050 PHF23Q9BUL5 403 aaPredicted RBP24.28■■□□□ 1.48
CLN3-254ENST00000637050 AHDC1Q5TGY3 1603 aaPredicted RBP24.27■■□□□ 1.48
CLN3-254ENST00000637050 PLEKHG5O94827 1062 aa24.27■■□□□ 1.48
CLN3-254ENST00000637050 CCDC27Q2M243 656 aa24.27■■□□□ 1.48
CLN3-254ENST00000637050 IGSF1Q8N6C5 1336 aa24.26■■□□□ 1.47
CLN3-254ENST00000637050 RRP7AQ9Y3A4 280 aaKnown RBP24.26■■□□□ 1.47
CLN3-254ENST00000637050 WWC1Q8IX03 1113 aa24.25■■□□□ 1.47
CLN3-254ENST00000637050 CDCA7LQ96GN5 454 aa24.25■■□□□ 1.47
CLN3-254ENST00000637050 TMPOP42166 694 aaKnown RBP24.24■■□□□ 1.47
CLN3-254ENST00000637050 SULT6B1Q6IMI4 303 aa24.24■■□□□ 1.47
CLN3-254ENST00000637050 CABLES1Q8TDN4 633 aa24.24■■□□□ 1.47
CLN3-254ENST00000637050 EYA1Q99502 592 aa24.24■■□□□ 1.47
CLN3-254ENST00000637050 NEFMP07197 916 aa24.24■■□□□ 1.47
CLN3-254ENST00000637050 GOLGA2Q08379 1002 aa24.24■■□□□ 1.47
CLN3-254ENST00000637050 NEUROD2Q15784 382 aa24.24■■□□□ 1.47
CLN3-254ENST00000637050 AEBP1Q8IUX7 1158 aa24.24■■□□□ 1.47
CLN3-254ENST00000637050 KDRP35968 1356 aa24.23■■□□□ 1.47
CLN3-254ENST00000637050 ZBTB7CA1YPR0 619 aa24.22■■□□□ 1.47
CLN3-254ENST00000637050 ZC3H6P61129 1189 aaKnown RBP24.22■■□□□ 1.47
CLN3-254ENST00000637050 PHACTR3Q96KR7 559 aa24.22■■□□□ 1.47
CLN3-254ENST00000637050 TOM1O60784 492 aa24.21■■□□□ 1.47
CLN3-254ENST00000637050 CPDO75976 1380 aa24.21■■□□□ 1.47
CLN3-254ENST00000637050 ABCC6O95255 1503 aa24.21■■□□□ 1.47
CLN3-254ENST00000637050 LTV1Q96GA3 475 aaPredicted RBP24.2■■□□□ 1.46
CLN3-254ENST00000637050 ABCA3Q99758 1704 aa24.19■■□□□ 1.46
CLN3-254ENST00000637050 COL18A1P39060 1754 aa24.19■■□□□ 1.46
CLN3-254ENST00000637050 SLFN5Q08AF3 891 aa24.18■■□□□ 1.46
CLN3-254ENST00000637050 NFE2L2Q16236 605 aa24.18■■□□□ 1.46
CLN3-254ENST00000637050 WDR63Q8IWG1 891 aa24.18■■□□□ 1.46
CLN3-254ENST00000637050 LRRC59Q96AG4 307 aaKnown RBP24.18■■□□□ 1.46
CLN3-254ENST00000637050 RIPK4P57078 832 aa24.18■■□□□ 1.46
CLN3-254ENST00000637050 TRMT2AQ8IZ69 625 aaKnown RBP24.18■■□□□ 1.46
CLN3-254ENST00000637050 TRIM35Q9UPQ4 493 aa24.18■■□□□ 1.46
CLN3-254ENST00000637050 AXIN2Q9Y2T1 843 aa24.18■■□□□ 1.46
CLN3-254ENST00000637050 DUSP27Q5VZP5 1158 aa24.16■■□□□ 1.46
CLN3-254ENST00000637050 KIAA0232Q92628 1395 aa24.15■■□□□ 1.46
CLN3-254ENST00000637050 E9PSI1 815 aa24.15■■□□□ 1.46
CLN3-254ENST00000637050 SPINK5Q9NQ38 1064 aaPredicted RBP24.15■■□□□ 1.46
CLN3-254ENST00000637050 RGPD5Q99666 1765 aa24.15■■□□□ 1.46
CLN3-254ENST00000637050 ANKRD24Q8TF21 1146 aa24.15■■□□□ 1.46
CLN3-254ENST00000637050 NBPF6Q5VWK0 638 aa24.14■■□□□ 1.45
CLN3-254ENST00000637050 NBPF4Q96M43 638 aa24.14■■□□□ 1.45
CLN3-254ENST00000637050 GTF3C3Q9Y5Q9 886 aa24.14■■□□□ 1.45
CLN3-254ENST00000637050 NCAPD2Q15021 1401 aa24.14■■□□□ 1.45
CLN3-254ENST00000637050 ERBB3P21860 1342 aa24.13■■□□□ 1.45
CLN3-254ENST00000637050 CAMTA1Q9Y6Y1 1673 aa24.13■■□□□ 1.45
CLN3-254ENST00000637050 PHLPP1O60346 1717 aa24.13■■□□□ 1.45
CLN3-254ENST00000637050 COL16A1Q07092 1604 aaPredicted RBP24.12■■□□□ 1.45
CLN3-254ENST00000637050 COL22A1Q8NFW1 1626 aaPredicted RBP24.12■■□□□ 1.45
CLN3-254ENST00000637050 RGPD2P0DJD1 1756 aa24.12■■□□□ 1.45
CLN3-254ENST00000637050 UBAP1LF5GYI3 381 aa24.11■■□□□ 1.45
CLN3-254ENST00000637050 SUPT16HQ9Y5B9 1047 aaKnown RBP24.11■■□□□ 1.45
CLN3-254ENST00000637050 HAP1P54257 671 aaPredicted RBP24.1■■□□□ 1.45
CLN3-254ENST00000637050 PIP4K2BP78356 416 aa24.1■■□□□ 1.45
CLN3-254ENST00000637050 CHRNA2Q15822 529 aa24.1■■□□□ 1.45
CLN3-254ENST00000637050 DLG5Q8TDM6 1919 aa24.1■■□□□ 1.45
CLN3-254ENST00000637050 LMO7Q8WWI1 1683 aa24.1■■□□□ 1.45
CLN3-254ENST00000637050 CERKQ8TCT0 537 aa24.09■■□□□ 1.45
CLN3-254ENST00000637050 LMOD3Q0VAK6 560 aa24.08■■□□□ 1.45
CLN3-254ENST00000637050 USHBP1Q8N6Y0 703 aa24.08■■□□□ 1.45
CLN3-254ENST00000637050 IL16Q14005 1332 aa24.08■■□□□ 1.45
CLN3-254ENST00000637050 PRDM11Q9NQV5 511 aa24.08■■□□□ 1.44
CLN3-254ENST00000637050 FAM208AQ9UK61 1670 aaKnown RBP24.07■■□□□ 1.44
CLN3-254ENST00000637050 MTHFSDQ2M296 383 aaKnown RBP24.05■■□□□ 1.44
CLN3-254ENST00000637050 GAS2L2Q8NHY3 880 aa24.04■■□□□ 1.44
CLN3-254ENST00000637050 RCAN3Q9UKA8 241 aa24.04■■□□□ 1.44
CLN3-254ENST00000637050 RNF123Q5XPI4 1314 aa24.03■■□□□ 1.44
CLN3-254ENST00000637050 MYH16Q9H6N6 1097 aa24.03■■□□□ 1.44
CLN3-254ENST00000637050 CALD1Q05682 793 aaKnown RBP24.02■■□□□ 1.44
CLN3-254ENST00000637050 NLRP2Q9NX02 1062 aa24■■□□□ 1.43
CLN3-254ENST00000637050 COL5A2P05997 1499 aaPredicted RBP24■■□□□ 1.43
CLN3-254ENST00000637050 FAM83GA6ND36 823 aa23.99■■□□□ 1.43
CLN3-254ENST00000637050 CSB-PGBD3P0DP91 1061 aa23.99■■□□□ 1.43
CLN3-254ENST00000637050 THUMPD2Q9BTF0 503 aaKnown RBP23.99■■□□□ 1.43
CLN3-254ENST00000637050 HTATSF1O43719 755 aaKnown RBP23.98■■□□□ 1.43
CLN3-254ENST00000637050 NEFLP07196 543 aa23.98■■□□□ 1.43
CLN3-254ENST00000637050 WDR17Q8IZU2 1322 aa23.97■■□□□ 1.43
CLN3-254ENST00000637050 FANCIQ9NVI1 1328 aa23.97■■□□□ 1.43
CLN3-254ENST00000637050 COL14A1Q05707 1796 aaKnown RBP23.97■■□□□ 1.43
CLN3-254ENST00000637050 DCTN1Q14203 1278 aa23.96■■□□□ 1.43
CLN3-254ENST00000637050 IFT57Q9NWB7 429 aa23.96■■□□□ 1.43
CLN3-254ENST00000637050 PLEKHG2Q9H7P9 1386 aa23.96■■□□□ 1.43
CLN3-254ENST00000637050 ZNF853P0CG23 659 aa23.95■■□□□ 1.43
CLN3-254ENST00000637050 AMOTQ4VCS5 1084 aa23.95■■□□□ 1.43
CLN3-254ENST00000637050 GNAI1P63096 354 aa23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms