RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 AMOTQ4VCS5 1084 aa5.66□□□□□ -1.5
SCN1A-210ENST00000635776 GBP4Q96PP9 640 aa5.66□□□□□ -1.5
SCN1A-210ENST00000635776 TSPYL4Q9UJ04 414 aa5.66□□□□□ -1.5
SCN1A-210ENST00000635776 TEFQ10587 303 aa5.65□□□□□ -1.5
SCN1A-210ENST00000635776 C1orf141Q5JVX7 400 aa5.65□□□□□ -1.5
SCN1A-210ENST00000635776 SENP3Q9H4L4 574 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-210ENST00000635776 PLEKHF1Q96S99 279 aa5.65□□□□□ -1.5
SCN1A-210ENST00000635776 ARHGEF10O15013 1369 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 EMILIN1Q9Y6C2 1016 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 NBR1Q14596 966 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 C20orf194Q5TEA3 1177 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 TSR2Q969E8 191 aaKnown RBP5.65□□□□□ -1.51
SCN1A-210ENST00000635776 SLC26A8Q96RN1 970 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 RIMBP3CA6NJZ7 1639 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 RIMBP3BA6NNM3 1639 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 RIMBP3Q9UFD9 1639 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 CDC45O75419 566 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 TRIM27P14373 513 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 PHF8Q9UPP1 1060 aa5.65□□□□□ -1.51
SCN1A-210ENST00000635776 CPSF1Q10570 1443 aaKnown RBP5.64□□□□□ -1.51
SCN1A-210ENST00000635776 PTCH1Q13635 1447 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 ISY1Q9ULR0 285 aaKnown RBP5.64□□□□□ -1.51
SCN1A-210ENST00000635776 PPLO60437 1756 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 QRICH2Q9H0J4 1663 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 DDX58O95786 925 aaKnown RBP5.64□□□□□ -1.51
SCN1A-210ENST00000635776 INTS3Q68E01 1043 aaKnown RBP5.64□□□□□ -1.51
SCN1A-210ENST00000635776 SMC5Q8IY18 1101 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 ABTB2Q8N961 1025 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 SRCIN1Q9C0H9 1055 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 HSP90AB1P08238 724 aaKnown RBP5.64□□□□□ -1.51
SCN1A-210ENST00000635776 HOXB7P09629 217 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 ANKRD45Q5TZF3 282 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 GPATCH3Q96I76 525 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 CHMP5Q9NZZ3 219 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 CIZ1Q9ULV3 898 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-210ENST00000635776 DDX11L8A8MPP1 907 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 SKOR2Q2VWA4 1001 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-210ENST00000635776 CHMP4CQ96CF2 233 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 USP31Q70CQ4 1352 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 PREX1Q8TCU6 1659 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 GNAT3A8MTJ3 354 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 BMP2KLQ5H9B9 411 aa5.64□□□□□ -1.51
SCN1A-210ENST00000635776 RICTORQ6R327 1708 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 TMEM131LA2VDJ0 1609 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 METP08581 1390 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 ST18O60284 1047 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 CHD1LQ86WJ1 897 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 MCM2P49736 904 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 C22orf23Q9BZE7 217 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 TRIM35Q9UPQ4 493 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 VAMP4O75379 141 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 TMEM57Q8N5G2 664 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 CDC42BPGQ6DT37 1551 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 IQSEC2Q5JU85 1478 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 MRPL50Q8N5N7 158 aaKnown RBP5.63□□□□□ -1.51
SCN1A-210ENST00000635776 MBIPQ9NS73 344 aa5.63□□□□□ -1.51
SCN1A-210ENST00000635776 GNAI2P04899 355 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 USP6P35125 1406 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 PDIA4P13667 645 aaKnown RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 ZBTB40Q9NUA8 1239 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 DIP2AQ14689 1571 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 SPINK5Q9NQ38 1064 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 IFT172Q9UG01 1749 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 ATF3P18847 181 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 EIF4A2Q14240 407 aaKnown RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 SOX12O15370 315 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 NCLP19338 710 aaKnown RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 MFAP1P55081 439 aaKnown RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 RRS1Q15050 365 aaKnown RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 FKBP5Q13451 457 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 TAF7Q15545 349 aaPredicted RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 RAPGEF4Q8WZA2 1011 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 ERC1Q8IUD2 1116 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 PTPRUQ92729 1446 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 EPB41L2O43491 1005 aaKnown RBP5.62□□□□□ -1.51
SCN1A-210ENST00000635776 NEXNQ0ZGT2 675 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 RABEP1Q15276 862 aa5.62□□□□□ -1.51
SCN1A-210ENST00000635776 ELL2O00472 640 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-210ENST00000635776 CHL1O00533 1208 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 ZNF853P0CG23 659 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 LMOD2Q6P5Q4 547 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 NUTM2FA1L443 756 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 PROSER2Q86WR7 435 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-210ENST00000635776 MSH6P52701 1360 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 SLC4A2P04920 1241 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 KCNA6P17658 529 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 RUFY2Q8WXA3 655 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 MROH2AA6NES4 1674 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 OS9Q13438 667 aaPredicted RBP5.61□□□□□ -1.51
SCN1A-210ENST00000635776 C8orf34Q49A92 452 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 ESCO1Q5FWF5 840 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 CPS1P31327 1500 aa5.61□□□□□ -1.51
SCN1A-210ENST00000635776 RAB11FIP3O75154 756 aa5.6□□□□□ -1.51
SCN1A-210ENST00000635776 DEKP35659 375 aaKnown RBP5.6□□□□□ -1.51
SCN1A-210ENST00000635776 NUCB1Q02818 461 aa5.6□□□□□ -1.51
SCN1A-210ENST00000635776 KIAA1211Q6ZU35 1233 aa5.6□□□□□ -1.51
SCN1A-210ENST00000635776 IGHDP01880 384 aa5.6□□□□□ -1.51
SCN1A-210ENST00000635776 NUCB2P80303 420 aa5.6□□□□□ -1.51
SCN1A-210ENST00000635776 UBTFL1P0CB47 393 aaPredicted RBP5.6□□□□□ -1.51
SCN1A-210ENST00000635776 GSE1Q14687 1217 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms