RNA–Protein interactions for RNA: ENST00000635273.1

SMARCA2-238, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 5

Gene SMARCA2, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-238	ENST00000635273	DEPDC4	Q8N2C3	294 aa		11.43	□□□□□ -0.58
SMARCA2-238	ENST00000635273	PCDHB9	Q9Y5E1	797 aa		11.43	□□□□□ -0.58
SMARCA2-238	ENST00000635273	SLFNL1	Q499Z3	407 aa		11.42	□□□□□ -0.58
SMARCA2-238	ENST00000635273	PHTF2	Q8N3S3	785 aa		11.42	□□□□□ -0.58
SMARCA2-238	ENST00000635273	ADAM32	Q8TC27	787 aa		11.41	□□□□□ -0.58
SMARCA2-238	ENST00000635273	ARHGAP9	Q9BRR9	750 aa		11.41	□□□□□ -0.58
SMARCA2-238	ENST00000635273	ZMIZ1	Q9ULJ6	1067 aa		11.41	□□□□□ -0.58
SMARCA2-238	ENST00000635273	MFAP1	P55081	439 aa	Known RBP	11.4	□□□□□ -0.58
SMARCA2-238	ENST00000635273	PTCRA	Q6ISU1	281 aa	Predicted RBP	11.4	□□□□□ -0.58
SMARCA2-238	ENST00000635273	MTR	Q99707	1265 aa		11.4	□□□□□ -0.58
SMARCA2-238	ENST00000635273	UNC93B1	Q9H1C4	597 aa		11.4	□□□□□ -0.58
SMARCA2-238	ENST00000635273	STK17A	Q9UEE5	414 aa		11.4	□□□□□ -0.58
SMARCA2-238	ENST00000635273	TMEM164	Q5U3C3	297 aa		11.39	□□□□□ -0.59
SMARCA2-238	ENST00000635273	RNF135	Q8IUD6	432 aa		11.39	□□□□□ -0.59
SMARCA2-238	ENST00000635273	CCDC24	Q8N4L8	307 aa		11.39	□□□□□ -0.59
SMARCA2-238	ENST00000635273	STK32A	Q8WU08	396 aa		11.39	□□□□□ -0.59
SMARCA2-238	ENST00000635273	MKRN1	Q9UHC7	482 aa	Known RBP	11.39	□□□□□ -0.59
SMARCA2-238	ENST00000635273	NOVA2	Q9UNW9	492 aa	Known RBP	11.39	□□□□□ -0.59
SMARCA2-238	ENST00000635273	DGAT1	O75907	488 aa		11.38	□□□□□ -0.59
SMARCA2-238	ENST00000635273	NCOA4	Q13772	614 aa		11.38	□□□□□ -0.59
SMARCA2-238	ENST00000635273	SH3BP5L	Q7L8J4	393 aa		11.38	□□□□□ -0.59
SMARCA2-238	ENST00000635273	RGS22	Q8NE09	1264 aa		11.38	□□□□□ -0.59
SMARCA2-238	ENST00000635273	FAM196B	A6NMK8	535 aa		11.37	□□□□□ -0.59
SMARCA2-238	ENST00000635273	CRTC2	Q53ET0	693 aa	Predicted RBP	11.37	□□□□□ -0.59
SMARCA2-238	ENST00000635273	ZBTB33	Q86T24	672 aa		11.37	□□□□□ -0.59
SMARCA2-238	ENST00000635273	PLPP7	Q8NBV4	271 aa		11.37	□□□□□ -0.59
SMARCA2-238	ENST00000635273	CHIC2	Q9UKJ5	165 aa		11.37	□□□□□ -0.59
SMARCA2-238	ENST00000635273	IVNS1ABP	Q9Y6Y0	642 aa		11.37	□□□□□ -0.59
SMARCA2-238	ENST00000635273	LZTS3	O60299	673 aa	Predicted RBP	11.36	□□□□□ -0.59
SMARCA2-238	ENST00000635273	SLC6A16	Q9GZN6	736 aa		11.36	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L15	C9J2P7	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L10	C9JJH3	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L13	C9JLJ4	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L12	C9JPN9	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L11	C9JVI0	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L21	D6R901	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L18	D6R9N7	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L22	D6RA61	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L17	D6RBQ6	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L19	D6RCP7	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L20	D6RJB6	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	MYT1	Q01538	1121 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	USP17L24	Q0WX57	530 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	ZNF516	Q92618	1163 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	MTMR7	Q9Y216	660 aa		11.35	□□□□□ -0.59
SMARCA2-238	ENST00000635273	ATP5J2-PTCD1	G3V325	749 aa		11.34	□□□□□ -0.59
SMARCA2-238	ENST00000635273	RASA1	P20936	1047 aa		11.34	□□□□□ -0.59
SMARCA2-238	ENST00000635273	PTK7	Q13308	1070 aa		11.34	□□□□□ -0.59
SMARCA2-238	ENST00000635273	MAP7D1	Q3KQU3	841 aa		11.34	□□□□□ -0.59
SMARCA2-238	ENST00000635273	LARP1	Q6PKG0	1096 aa	Known RBP	11.34	□□□□□ -0.59
SMARCA2-238	ENST00000635273	TSGA10IP	Q3SY00	556 aa		11.33	□□□□□ -0.6
SMARCA2-238	ENST00000635273	B4GALNT3	Q6L9W6	998 aa		11.33	□□□□□ -0.6
SMARCA2-238	ENST00000635273	SH3RF1	Q7Z6J0	888 aa		11.33	□□□□□ -0.6
SMARCA2-238	ENST00000635273	DZIP3	Q86Y13	1208 aa	Known RBP	11.33	□□□□□ -0.6
SMARCA2-238	ENST00000635273	BAP1	Q92560	729 aa		11.32	□□□□□ -0.6
SMARCA2-238	ENST00000635273	EML3	Q32P44	896 aa		11.31	□□□□□ -0.6
SMARCA2-238	ENST00000635273	LCE2A	Q5TA79	106 aa	Predicted RBP	11.31	□□□□□ -0.6
SMARCA2-238	ENST00000635273	CARD14	Q9BXL6	1004 aa		11.31	□□□□□ -0.6
SMARCA2-238	ENST00000635273	MAGEB6P1	A0A0J9YX57	407 aa		11.3	□□□□□ -0.6
SMARCA2-238	ENST00000635273	FAM200A	Q8TCP9	573 aa		11.3	□□□□□ -0.6
SMARCA2-238	ENST00000635273	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.3	□□□□□ -0.6
SMARCA2-238	ENST00000635273	GNE	Q9Y223	722 aa	Known RBP	11.3	□□□□□ -0.6
SMARCA2-238	ENST00000635273	POTEC	B2RU33	542 aa		11.29	□□□□□ -0.6
SMARCA2-238	ENST00000635273	INSM1	Q01101	510 aa	Predicted RBP	11.29	□□□□□ -0.6
SMARCA2-238	ENST00000635273	FAM69C	Q0P6D2	419 aa		11.29	□□□□□ -0.6
SMARCA2-238	ENST00000635273	PHLDB3	Q6NSJ2	640 aa		11.29	□□□□□ -0.6
SMARCA2-238	ENST00000635273	BPHL	Q86WA6	291 aa	Predicted RBP	11.29	□□□□□ -0.6
SMARCA2-238	ENST00000635273	ANKMY2	Q8IV38	441 aa		11.29	□□□□□ -0.6
SMARCA2-238	ENST00000635273	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.29	□□□□□ -0.6
SMARCA2-238	ENST00000635273	GIGYF1	O75420	1035 aa	Predicted RBP	11.28	□□□□□ -0.6
SMARCA2-238	ENST00000635273	LINC01559	Q495D7	138 aa		11.28	□□□□□ -0.6
SMARCA2-238	ENST00000635273	OGFOD1	Q8N543	542 aa		11.28	□□□□□ -0.6
SMARCA2-238	ENST00000635273	NKX2-3	Q8TAU0	364 aa		11.28	□□□□□ -0.6
SMARCA2-238	ENST00000635273	FOXJ1	Q92949	421 aa		11.28	□□□□□ -0.6
SMARCA2-238	ENST00000635273	SLAIN2	Q9P270	581 aa		11.28	□□□□□ -0.6
SMARCA2-238	ENST00000635273	S1PR4	O95977	384 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	SSFA2	P28290	1259 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	CLDN10	P78369	228 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	AGER	Q15109	404 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	ERFE	Q4G0M1	354 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	C4orf48	Q5BLP8	95 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	TRIM50	Q86XT4	487 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	ZNF511	Q8NB15	262 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	NOD1	Q9Y239	953 aa		11.27	□□□□□ -0.61
SMARCA2-238	ENST00000635273	LOC100996750	A0A140TA64	210 aa		11.26	□□□□□ -0.61
SMARCA2-238	ENST00000635273	DPYD	Q12882	1025 aa		11.26	□□□□□ -0.61
SMARCA2-238	ENST00000635273	TXNDC2	Q86VQ3	553 aa		11.26	□□□□□ -0.61
SMARCA2-238	ENST00000635273	KRTAP4-6	Q9BYQ5	205 aa		11.26	□□□□□ -0.61
SMARCA2-238	ENST00000635273	DOLK	Q9UPQ8	538 aa		11.26	□□□□□ -0.61
SMARCA2-238	ENST00000635273	FCF1	Q9Y324	198 aa	Known RBP	11.26	□□□□□ -0.61
SMARCA2-238	ENST00000635273	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.25	□□□□□ -0.61
SMARCA2-238	ENST00000635273	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.25	□□□□□ -0.61
SMARCA2-238	ENST00000635273	CLP1	Q92989	425 aa	Known RBP	11.25	□□□□□ -0.61
SMARCA2-238	ENST00000635273	ZNF594	Q96JF6	807 aa	Predicted RBP	11.25	□□□□□ -0.61
SMARCA2-238	ENST00000635273	DNAAF2	Q9NVR5	837 aa	Known RBP	11.25	□□□□□ -0.61
SMARCA2-238	ENST00000635273	WFS1	O76024	890 aa		11.24	□□□□□ -0.61
SMARCA2-238	ENST00000635273	ATP1A2	P50993	1020 aa		11.24	□□□□□ -0.61
SMARCA2-238	ENST00000635273	CCDC27	Q2M243	656 aa		11.24	□□□□□ -0.61
SMARCA2-238	ENST00000635273	ZBTB7B	O15156	539 aa	Predicted RBP	11.23	□□□□□ -0.61

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