RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587	ITSN1	Q15811	1721 aa		12.87	□□□□□ -0.35
PDLIM5-223	ENST00000627587	FAM196A	Q6ZSG2	479 aa		12.87	□□□□□ -0.35
PDLIM5-223	ENST00000627587	KIF20B	Q96Q89	1820 aa		12.86	□□□□□ -0.35
PDLIM5-223	ENST00000627587	RGPD1	P0DJD0	1748 aa		12.86	□□□□□ -0.35
PDLIM5-223	ENST00000627587	NLRP13	Q86W25	1043 aa		12.86	□□□□□ -0.35
PDLIM5-223	ENST00000627587	PNISR	Q8TF01	805 aa	Known RBP	12.86	□□□□□ -0.35
PDLIM5-223	ENST00000627587	EN1	Q05925	392 aa	Predicted RBP	12.85	□□□□□ -0.35
PDLIM5-223	ENST00000627587	CCDC61	Q9Y6R9	512 aa		12.85	□□□□□ -0.35
PDLIM5-223	ENST00000627587	SPATA31A1	Q5TZJ5	1347 aa		12.85	□□□□□ -0.35
PDLIM5-223	ENST00000627587	DISP2	A7MBM2	1401 aa		12.85	□□□□□ -0.35
PDLIM5-223	ENST00000627587	PLEKHG3	A1L390	1219 aa		12.85	□□□□□ -0.35
PDLIM5-223	ENST00000627587	EVA1C	P58658	441 aa		12.85	□□□□□ -0.35
PDLIM5-223	ENST00000627587	CABP1	Q9NZU7	370 aa		12.85	□□□□□ -0.35
PDLIM5-223	ENST00000627587	CPSF1	Q10570	1443 aa	Known RBP	12.84	□□□□□ -0.35
PDLIM5-223	ENST00000627587	PPP2R1A	P30153	589 aa		12.84	□□□□□ -0.35
PDLIM5-223	ENST00000627587	FAM9B	Q8IZU0	186 aa		12.84	□□□□□ -0.35
PDLIM5-223	ENST00000627587	PPIP5K1	Q6PFW1	1433 aa		12.84	□□□□□ -0.35
PDLIM5-223	ENST00000627587	POLR3A	O14802	1390 aa	Predicted RBP	12.83	□□□□□ -0.36
PDLIM5-223	ENST00000627587	BARGIN	Q6ZT62	677 aa		12.83	□□□□□ -0.36
PDLIM5-223	ENST00000627587	NRK	Q7Z2Y5	1582 aa		12.83	□□□□□ -0.36
PDLIM5-223	ENST00000627587	KIAA0232	Q92628	1395 aa		12.83	□□□□□ -0.36
PDLIM5-223	ENST00000627587	CRYBG1	Q9Y4K1	1723 aa		12.83	□□□□□ -0.36
PDLIM5-223	ENST00000627587	THSD7A	Q9UPZ6	1657 aa		12.83	□□□□□ -0.36
PDLIM5-223	ENST00000627587	PSD	A5PKW4	1024 aa	Predicted RBP	12.82	□□□□□ -0.36
PDLIM5-223	ENST00000627587	ACE	P12821	1306 aa		12.82	□□□□□ -0.36
PDLIM5-223	ENST00000627587	NPM3	O75607	178 aa	Known RBP	12.82	□□□□□ -0.36
PDLIM5-223	ENST00000627587	STRN4	Q9NRL3	753 aa		12.82	□□□□□ -0.36
PDLIM5-223	ENST00000627587	ZC3H6	P61129	1189 aa	Known RBP	12.81	□□□□□ -0.36
PDLIM5-223	ENST00000627587	PDE3B	Q13370	1112 aa		12.81	□□□□□ -0.36
PDLIM5-223	ENST00000627587	THRAP3	Q9Y2W1	955 aa	Known RBP	12.81	□□□□□ -0.36
PDLIM5-223	ENST00000627587	SRCAP	Q6ZRS2	3230 aa		12.81	□□□□□ -0.36
PDLIM5-223	ENST00000627587	CGNL1	Q0VF96	1302 aa		12.81	□□□□□ -0.36
PDLIM5-223	ENST00000627587	CHRNA2	Q15822	529 aa		12.8	□□□□□ -0.36
PDLIM5-223	ENST00000627587	ABTB2	Q8N961	1025 aa		12.8	□□□□□ -0.36
PDLIM5-223	ENST00000627587	CAMKK2	Q96RR4	588 aa		12.8	□□□□□ -0.36
PDLIM5-223	ENST00000627587	NSD2	O96028	1365 aa		12.8	□□□□□ -0.36
PDLIM5-223	ENST00000627587	EZH2	Q15910	746 aa	Known RBP	12.8	□□□□□ -0.36
PDLIM5-223	ENST00000627587	FAM182B	Q5T319	152 aa		12.8	□□□□□ -0.36
PDLIM5-223	ENST00000627587	TERF2IP	Q9NYB0	399 aa		12.8	□□□□□ -0.36
PDLIM5-223	ENST00000627587	CPD	O75976	1380 aa		12.79	□□□□□ -0.36
PDLIM5-223	ENST00000627587	TRIM37	O94972	964 aa		12.79	□□□□□ -0.36
PDLIM5-223	ENST00000627587	APBA3	O96018	575 aa		12.79	□□□□□ -0.36
PDLIM5-223	ENST00000627587	R3HDM1	Q15032	1099 aa	Known RBP	12.79	□□□□□ -0.36
PDLIM5-223	ENST00000627587	TCP11L2	Q8N4U5	519 aa		12.79	□□□□□ -0.36
PDLIM5-223	ENST00000627587	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.79	□□□□□ -0.36
PDLIM5-223	ENST00000627587	FYB1	O15117	783 aa		12.78	□□□□□ -0.36
PDLIM5-223	ENST00000627587	HNRNPU	Q00839	825 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
PDLIM5-223	ENST00000627587	NBPF14	Q5TI25	921 aa		12.78	□□□□□ -0.36
PDLIM5-223	ENST00000627587	NUTM2G	Q5VZR2	741 aa		12.78	□□□□□ -0.36
PDLIM5-223	ENST00000627587	SSH2	Q76I76	1423 aa		12.78	□□□□□ -0.36
PDLIM5-223	ENST00000627587	TNS1	Q9HBL0	1735 aa	Known RBP	12.77	□□□□□ -0.36
PDLIM5-223	ENST00000627587	EDC4	Q6P2E9	1401 aa	Known RBP	12.77	□□□□□ -0.37
PDLIM5-223	ENST00000627587	USP19	O94966	1318 aa		12.77	□□□□□ -0.37
PDLIM5-223	ENST00000627587	GC	P02774	474 aa		12.76	□□□□□ -0.37
PDLIM5-223	ENST00000627587	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	12.76	□□□□□ -0.37
PDLIM5-223	ENST00000627587	USP35	Q9P2H5	1018 aa		12.76	□□□□□ -0.37
PDLIM5-223	ENST00000627587	MORC1	Q86VD1	984 aa		12.76	□□□□□ -0.37
PDLIM5-223	ENST00000627587	GGNBP2	Q9H3C7	697 aa		12.76	□□□□□ -0.37
PDLIM5-223	ENST00000627587	LARP1	Q6PKG0	1096 aa	Known RBP	12.75	□□□□□ -0.37
PDLIM5-223	ENST00000627587	MAP2	P11137	1827 aa	Known RBP	12.75	□□□□□ -0.37
PDLIM5-223	ENST00000627587	CAMTA1	Q9Y6Y1	1673 aa		12.74	□□□□□ -0.37
PDLIM5-223	ENST00000627587	INSR	P06213	1382 aa		12.74	□□□□□ -0.37
PDLIM5-223	ENST00000627587	USP6	P35125	1406 aa		12.73	□□□□□ -0.37
PDLIM5-223	ENST00000627587	TNNT2	P45379	298 aa	Predicted RBP	12.73	□□□□□ -0.37
PDLIM5-223	ENST00000627587	ZBED9	Q6R2W3	1325 aa		12.73	□□□□□ -0.37
PDLIM5-223	ENST00000627587	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	12.72	□□□□□ -0.37
PDLIM5-223	ENST00000627587	COL3A1	P02461	1466 aa	Predicted RBP	12.72	□□□□□ -0.37
PDLIM5-223	ENST00000627587	PIK3C2A	O00443	1686 aa		12.72	□□□□□ -0.37
PDLIM5-223	ENST00000627587	LMO7	Q8WWI1	1683 aa		12.72	□□□□□ -0.37
PDLIM5-223	ENST00000627587	NLRP6	P59044	892 aa		12.72	□□□□□ -0.37
PDLIM5-223	ENST00000627587	ZNF692	Q9BU19	519 aa	Predicted RBP	12.72	□□□□□ -0.37
PDLIM5-223	ENST00000627587	AATK	Q6ZMQ8	1374 aa		12.71	□□□□□ -0.37
PDLIM5-223	ENST00000627587	CRB1	P82279	1406 aa		12.71	□□□□□ -0.37
PDLIM5-223	ENST00000627587	NME9	Q86XW9	330 aa		12.71	□□□□□ -0.37
PDLIM5-223	ENST00000627587	CDCA7	Q9BWT1	371 aa	Predicted RBP	12.71	□□□□□ -0.37
PDLIM5-223	ENST00000627587	ADAMTS8	Q9UP79	889 aa		12.71	□□□□□ -0.37
PDLIM5-223	ENST00000627587	SENP3-EIF4A1	A0A087X0R7	540 aa		12.7	□□□□□ -0.38
PDLIM5-223	ENST00000627587	PLSCR1	O15162	318 aa		12.7	□□□□□ -0.38
PDLIM5-223	ENST00000627587	MTHFS	P49914	203 aa		12.7	□□□□□ -0.38
PDLIM5-223	ENST00000627587	USP54	Q70EL1	1684 aa		12.7	□□□□□ -0.38
PDLIM5-223	ENST00000627587	COL5A2	P05997	1499 aa	Predicted RBP	12.7	□□□□□ -0.38
PDLIM5-223	ENST00000627587	RREB1	Q92766	1687 aa		12.69	□□□□□ -0.38
PDLIM5-223	ENST00000627587	OVOS2	A0A0J9YW53	1432 aa		12.69	□□□□□ -0.38
PDLIM5-223	ENST00000627587	OVOS2	Q6IE36	1432 aa		12.69	□□□□□ -0.38
PDLIM5-223	ENST00000627587	PARP4	Q9UKK3	1724 aa	Known RBP	12.69	□□□□□ -0.38
PDLIM5-223	ENST00000627587	KCNH5	Q8NCM2	988 aa		12.69	□□□□□ -0.38
PDLIM5-223	ENST00000627587	SPON1	Q9HCB6	807 aa		12.69	□□□□□ -0.38
PDLIM5-223	ENST00000627587	TTC21B	Q7Z4L5	1316 aa		12.69	□□□□□ -0.38
PDLIM5-223	ENST00000627587	FBLN1	P23142	703 aa		12.68	□□□□□ -0.38
PDLIM5-223	ENST00000627587	DDB1	Q16531	1140 aa		12.68	□□□□□ -0.38
PDLIM5-223	ENST00000627587	OVOS2	A0A0G2JMS6	1433 aa		12.68	□□□□□ -0.38
PDLIM5-223	ENST00000627587	KCNQ2	O43526	872 aa		12.68	□□□□□ -0.38
PDLIM5-223	ENST00000627587	TOM1L2	Q6ZVM7	507 aa		12.68	□□□□□ -0.38
PDLIM5-223	ENST00000627587	SMG6	Q86US8	1419 aa	Known RBP	12.67	□□□□□ -0.38
PDLIM5-223	ENST00000627587	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.67	□□□□□ -0.38
PDLIM5-223	ENST00000627587	PPP1R1B	Q9UD71	204 aa	Predicted RBP	12.67	□□□□□ -0.38
PDLIM5-223	ENST00000627587	SLIT3	O75094	1523 aa		12.67	□□□□□ -0.38
PDLIM5-223	ENST00000627587	ZBTB7C	A1YPR0	619 aa		12.66	□□□□□ -0.38
PDLIM5-223	ENST00000627587	NUP188	Q5SRE5	1749 aa		12.66	□□□□□ -0.38
PDLIM5-223	ENST00000627587	PEAK1	Q9H792	1746 aa		12.66	□□□□□ -0.38

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