RNA–Protein interactions for RNA: ENST00000625767.1

CCNA1-203, Transcript of cyclin A1, humanhuman

TSL 1 (best) BASIC

Gene CCNA1, Length 1,699 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1-203ENST00000625767 HOXC9P31274 260 aa22.38■■□□□ 1.17
CCNA1-203ENST00000625767 MRS2Q9HD23 443 aa22.37■■□□□ 1.17
CCNA1-203ENST00000625767 RGPD2P0DJD1 1756 aa22.37■■□□□ 1.17
CCNA1-203ENST00000625767 FLT4P35916 1363 aa22.37■■□□□ 1.17
CCNA1-203ENST00000625767 FAM83GA6ND36 823 aa22.36■■□□□ 1.17
CCNA1-203ENST00000625767 PRDM11Q9NQV5 511 aa22.36■■□□□ 1.17
CCNA1-203ENST00000625767 IP6K1Q92551 441 aa22.35■■□□□ 1.17
CCNA1-203ENST00000625767 PLCH1Q4KWH8 1693 aa22.35■■□□□ 1.17
CCNA1-203ENST00000625767 CAMTA1Q9Y6Y1 1673 aa22.35■■□□□ 1.17
CCNA1-203ENST00000625767 COL14A1Q05707 1796 aaKnown RBP22.34■■□□□ 1.17
CCNA1-203ENST00000625767 CCER2I3L3R5 266 aa22.34■■□□□ 1.17
CCNA1-203ENST00000625767 SPATA31A6Q5VVP1 1343 aa22.34■■□□□ 1.17
CCNA1-203ENST00000625767 RTL1A6NKG5 1358 aa22.34■■□□□ 1.17
CCNA1-203ENST00000625767 LTV1Q96GA3 475 aaPredicted RBP22.33■■□□□ 1.17
CCNA1-203ENST00000625767 EIF4A2Q14240 407 aaKnown RBP22.32■■□□□ 1.16
CCNA1-203ENST00000625767 INSRP06213 1382 aa22.31■■□□□ 1.16
CCNA1-203ENST00000625767 KIF24Q5T7B8 1368 aa22.31■■□□□ 1.16
CCNA1-203ENST00000625767 CFAP53Q96M91 514 aa22.3■■□□□ 1.16
CCNA1-203ENST00000625767 ABCC6O95255 1503 aa22.29■■□□□ 1.16
CCNA1-203ENST00000625767 IL13P35225 146 aa22.29■■□□□ 1.16
CCNA1-203ENST00000625767 RGPD1P0DJD0 1748 aa22.29■■□□□ 1.16
CCNA1-203ENST00000625767 BLMP54132 1417 aaPredicted RBP22.28■■□□□ 1.16
CCNA1-203ENST00000625767 DIAPH1O60610 1272 aaKnown RBP22.28■■□□□ 1.16
CCNA1-203ENST00000625767 C8orf37Q96NL8 207 aa22.28■■□□□ 1.16
CCNA1-203ENST00000625767 BTG4Q9NY30 223 aa22.28■■□□□ 1.16
CCNA1-203ENST00000625767 NRAPQ86VF7 1730 aa22.28■■□□□ 1.16
CCNA1-203ENST00000625767 COL5A2P05997 1499 aaPredicted RBP22.27■■□□□ 1.16
CCNA1-203ENST00000625767 PNISRQ8TF01 805 aaKnown RBP22.27■■□□□ 1.16
CCNA1-203ENST00000625767 ANKRD24Q8TF21 1146 aa22.27■■□□□ 1.16
CCNA1-203ENST00000625767 ERBB3P21860 1342 aa22.27■■□□□ 1.16
CCNA1-203ENST00000625767 U2SURPO15042 1029 aaKnown RBP22.25■■□□□ 1.15
CCNA1-203ENST00000625767 FAM9BQ8IZU0 186 aa22.25■■□□□ 1.15
CCNA1-203ENST00000625767 NWD2Q9ULI1 1742 aa22.25■■□□□ 1.15
CCNA1-203ENST00000625767 SLIT2O94813 1529 aa22.24■■□□□ 1.15
CCNA1-203ENST00000625767 ILDR1Q86SU0 546 aaPredicted RBP22.24■■□□□ 1.15
CCNA1-203ENST00000625767 STRN4Q9NRL3 753 aa22.24■■□□□ 1.15
CCNA1-203ENST00000625767 USHBP1Q8N6Y0 703 aa22.23■■□□□ 1.15
CCNA1-203ENST00000625767 MEX3CQ5U5Q3 659 aaKnown RBP22.23■■□□□ 1.15
CCNA1-203ENST00000625767 EYA1Q99502 592 aa22.23■■□□□ 1.15
CCNA1-203ENST00000625767 NBPF6Q5VWK0 638 aa22.22■■□□□ 1.15
CCNA1-203ENST00000625767 NGLY1Q96IV0 654 aa22.22■■□□□ 1.15
CCNA1-203ENST00000625767 NBPF4Q96M43 638 aa22.22■■□□□ 1.15
CCNA1-203ENST00000625767 ADAMTS8Q9UP79 889 aa22.22■■□□□ 1.15
CCNA1-203ENST00000625767 FAM208AQ9UK61 1670 aaKnown RBP22.21■■□□□ 1.15
CCNA1-203ENST00000625767 HMOX1P09601 288 aa22.21■■□□□ 1.15
CCNA1-203ENST00000625767 LARP1Q6PKG0 1096 aaKnown RBP22.21■■□□□ 1.15
CCNA1-203ENST00000625767 AEBP1Q8IUX7 1158 aa22.21■■□□□ 1.15
CCNA1-203ENST00000625767 U2AF1L5P0DN76 240 aaPredicted RBP22.2■■□□□ 1.14
CCNA1-203ENST00000625767 CSB-PGBD3P0DP91 1061 aa22.2■■□□□ 1.14
CCNA1-203ENST00000625767 U2AF1Q01081 240 aaKnown RBP eCLIP22.2■■□□□ 1.14
CCNA1-203ENST00000625767 BCL9LQ86UU0 1499 aa22.19■■□□□ 1.14
CCNA1-203ENST00000625767 SENP3-EIF4A1A0A087X0R7 540 aa22.19■■□□□ 1.14
CCNA1-203ENST00000625767 WDR43Q15061 677 aaKnown RBP eCLIP22.19■■□□□ 1.14
CCNA1-203ENST00000625767 WDR17Q8IZU2 1322 aa22.19■■□□□ 1.14
CCNA1-203ENST00000625767 IGSF1Q8N6C5 1336 aa22.19■■□□□ 1.14
CCNA1-203ENST00000625767 EVA1CP58658 441 aa22.18■■□□□ 1.14
CCNA1-203ENST00000625767 NUDCQ9Y266 331 aa22.18■■□□□ 1.14
CCNA1-203ENST00000625767 NLRP2Q9NX02 1062 aa22.17■■□□□ 1.14
CCNA1-203ENST00000625767 SULT6B1Q6IMI4 303 aa22.17■■□□□ 1.14
CCNA1-203ENST00000625767 FNBP4Q8N3X1 1017 aaPredicted RBP22.17■■□□□ 1.14
CCNA1-203ENST00000625767 AFF2P51816 1311 aa22.16■■□□□ 1.14
CCNA1-203ENST00000625767 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.16■■□□□ 1.14
CCNA1-203ENST00000625767 TOM1L2Q6ZVM7 507 aa22.15■■□□□ 1.14
CCNA1-203ENST00000625767 CCDC146Q8IYE0 955 aa22.15■■□□□ 1.14
CCNA1-203ENST00000625767 USP35Q9P2H5 1018 aa22.14■■□□□ 1.14
CCNA1-203ENST00000625767 NCAPD2Q15021 1401 aa22.14■■□□□ 1.14
CCNA1-203ENST00000625767 UNC5CLQ8IV45 518 aa22.14■■□□□ 1.13
CCNA1-203ENST00000625767 RSPH6AQ9H0K4 717 aa22.14■■□□□ 1.13
CCNA1-203ENST00000625767 USP21Q9UK80 565 aa22.14■■□□□ 1.13
CCNA1-203ENST00000625767 CRB1P82279 1406 aa22.13■■□□□ 1.13
CCNA1-203ENST00000625767 KDRP35968 1356 aa22.12■■□□□ 1.13
CCNA1-203ENST00000625767 WNK3Q9BYP7 1800 aa22.11■■□□□ 1.13
CCNA1-203ENST00000625767 PRKAR2BP31323 418 aa22.11■■□□□ 1.13
CCNA1-203ENST00000625767 PLEKHF1Q96S99 279 aa22.1■■□□□ 1.13
CCNA1-203ENST00000625767 CARD10Q9BWT7 1032 aa22.1■■□□□ 1.13
CCNA1-203ENST00000625767 MEGF6O75095 1541 aa22.1■■□□□ 1.13
CCNA1-203ENST00000625767 PHACTR3Q96KR7 559 aa22.08■■□□□ 1.13
CCNA1-203ENST00000625767 CCDC9Q9Y3X0 531 aaKnown RBP22.08■■□□□ 1.13
CCNA1-203ENST00000625767 FCHSD2O94868 740 aa22.07■■□□□ 1.12
CCNA1-203ENST00000625767 SPATA31A1Q5TZJ5 1347 aa22.07■■□□□ 1.12
CCNA1-203ENST00000625767 SPATA31A5Q5VU36 1347 aa22.07■■□□□ 1.12
CCNA1-203ENST00000625767 SPATA31A7Q8IWB4 1347 aa22.07■■□□□ 1.12
CCNA1-203ENST00000625767 GLI3P10071 1580 aa22.06■■□□□ 1.12
CCNA1-203ENST00000625767 VPS72Q15906 364 aa22.06■■□□□ 1.12
CCNA1-203ENST00000625767 DLG5Q8TDM6 1919 aa22.05■■□□□ 1.12
CCNA1-203ENST00000625767 ATRNO75882 1429 aa22.05■■□□□ 1.12
CCNA1-203ENST00000625767 PARP4Q9UKK3 1724 aaKnown RBP22.04■■□□□ 1.12
CCNA1-203ENST00000625767 SHANK3Q9BYB0 1731 aa22.03■■□□□ 1.12
CCNA1-203ENST00000625767 RUNDC1Q96C34 613 aa22.03■■□□□ 1.12
CCNA1-203ENST00000625767 YTHDC1Q96MU7 727 aaKnown RBP22.03■■□□□ 1.12
CCNA1-203ENST00000625767 RGS17Q9UGC6 210 aaPredicted RBP22.03■■□□□ 1.12
CCNA1-203ENST00000625767 APAF1O14727 1248 aa22.02■■□□□ 1.12
CCNA1-203ENST00000625767 RRP7AQ9Y3A4 280 aaKnown RBP22.02■■□□□ 1.12
CCNA1-203ENST00000625767 DISP2A7MBM2 1401 aa22.02■■□□□ 1.12
CCNA1-203ENST00000625767 PKD1L3Q7Z443 1732 aa22.02■■□□□ 1.11
CCNA1-203ENST00000625767 TCP11L2Q8N4U5 519 aa22.01■■□□□ 1.11
CCNA1-203ENST00000625767 RAPGEF4Q8WZA2 1011 aa22.01■■□□□ 1.11
CCNA1-203ENST00000625767 QTRT2Q9H974 415 aaKnown RBP22.01■■□□□ 1.11
CCNA1-203ENST00000625767 SALL2Q9Y467 1007 aaPredicted RBP22.01■■□□□ 1.11
CCNA1-203ENST00000625767 OVOS2A0A0G2JMS6 1433 aa22■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms