RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 TTC21AQ8NDW8 1320 aa34■■■■□ 3.03
CPSF1-214ENST00000622776 NUP188Q5SRE5 1749 aa33.99■■■■□ 3.03
CPSF1-214ENST00000622776 SOX12O15370 315 aa33.97■■■■□ 3.03
CPSF1-214ENST00000622776 PEAK1Q9H792 1746 aa33.96■■■■□ 3.03
CPSF1-214ENST00000622776 AKAP12Q02952 1782 aa33.96■■■■□ 3.03
CPSF1-214ENST00000622776 LRRC37A3O60309 1634 aa33.95■■■■□ 3.03
CPSF1-214ENST00000622776 CDCA7Q9BWT1 371 aaPredicted RBP33.94■■■■□ 3.02
CPSF1-214ENST00000622776 KTN1Q86UP2 1357 aaKnown RBP33.94■■■■□ 3.02
CPSF1-214ENST00000622776 CSB-PGBD3P0DP91 1061 aa33.91■■■■□ 3.02
CPSF1-214ENST00000622776 CARD10Q9BWT7 1032 aa33.91■■■■□ 3.02
CPSF1-214ENST00000622776 PLSCR1O15162 318 aa33.9■■■■□ 3.02
CPSF1-214ENST00000622776 MARCH10Q8NA82 808 aaPredicted RBP33.9■■■■□ 3.02
CPSF1-214ENST00000622776 SBF2Q86WG5 1849 aa33.89■■■■□ 3.02
CPSF1-214ENST00000622776 BCL11BQ9C0K0 894 aaPredicted RBP33.89■■■■□ 3.02
CPSF1-214ENST00000622776 SBNO2Q9Y2G9 1366 aa33.88■■■■□ 3.01
CPSF1-214ENST00000622776 RGPD5Q99666 1765 aa33.88■■■■□ 3.01
CPSF1-214ENST00000622776 PTF1AQ7RTS3 328 aa33.87■■■■□ 3.01
CPSF1-214ENST00000622776 NFAT5O94916 1531 aa33.87■■■■□ 3.01
CPSF1-214ENST00000622776 WNK3Q9BYP7 1800 aa33.86■■■■□ 3.01
CPSF1-214ENST00000622776 CARD11Q9BXL7 1154 aa33.85■■■■□ 3.01
CPSF1-214ENST00000622776 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.84■■■■□ 3.01
CPSF1-214ENST00000622776 BCL9O00512 1426 aa33.84■■■■□ 3.01
CPSF1-214ENST00000622776 SPON1Q9HCB6 807 aa33.83■■■■□ 3.01
CPSF1-214ENST00000622776 RGPD3A6NKT7 1758 aaPredicted RBP33.82■■■■□ 3
CPSF1-214ENST00000622776 RGPD4Q7Z3J3 1758 aa33.82■■■■□ 3
CPSF1-214ENST00000622776 USP31Q70CQ4 1352 aa33.82■■■■□ 3
CPSF1-214ENST00000622776 MON2Q7Z3U7 1717 aa33.82■■■■□ 3
CPSF1-214ENST00000622776 EXOC5O00471 708 aa33.81■■■■□ 3
CPSF1-214ENST00000622776 CCDC7Q96M83 1385 aa33.81■■■■□ 3
CPSF1-214ENST00000622776 KCNQ2O43526 872 aa33.8■■■■□ 3
CPSF1-214ENST00000622776 ABCC6O95255 1503 aa33.79■■■■□ 3
CPSF1-214ENST00000622776 NME9Q86XW9 330 aa33.79■■■■□ 3
CPSF1-214ENST00000622776 TMC1Q8TDI8 760 aa33.79■■■■□ 3
CPSF1-214ENST00000622776 CD163L1Q9NR16 1453 aa33.78■■■■□ 3
CPSF1-214ENST00000622776 ANO8Q9HCE9 1232 aaPredicted RBP33.78■■■■□ 3
CPSF1-214ENST00000622776 PROM2Q8N271 834 aa33.77■■■■□ 3
CPSF1-214ENST00000622776 PPP1R1BQ9UD71 204 aaPredicted RBP33.76■■■□□ 2.99
CPSF1-214ENST00000622776 HDGFL2Q7Z4V5 671 aaPredicted RBP33.75■■■□□ 2.99
CPSF1-214ENST00000622776 SLC12A5Q9H2X9 1139 aa33.75■■■□□ 2.99
CPSF1-214ENST00000622776 ERBB3P21860 1342 aa33.72■■■□□ 2.99
CPSF1-214ENST00000622776 TNS2Q63HR2 1409 aa33.71■■■□□ 2.99
CPSF1-214ENST00000622776 USP54Q70EL1 1684 aa33.71■■■□□ 2.99
CPSF1-214ENST00000622776 NLRP2Q9NX02 1062 aa33.71■■■□□ 2.99
CPSF1-214ENST00000622776 TONSLQ96HA7 1378 aa33.71■■■□□ 2.99
CPSF1-214ENST00000622776 TXNRD1Q16881 649 aa33.69■■■□□ 2.98
CPSF1-214ENST00000622776 TERF2IPQ9NYB0 399 aa33.69■■■□□ 2.98
CPSF1-214ENST00000622776 EDC4Q6P2E9 1401 aaKnown RBP33.69■■■□□ 2.98
CPSF1-214ENST00000622776 PUS7Q96PZ0 661 aaKnown RBP33.67■■■□□ 2.98
CPSF1-214ENST00000622776 PDGFDQ9GZP0 370 aaPredicted RBP33.66■■■□□ 2.98
CPSF1-214ENST00000622776 A0A1W2PP64 1363 aa33.65■■■□□ 2.98
CPSF1-214ENST00000622776 NINLQ9Y2I6 1382 aa33.65■■■□□ 2.98
CPSF1-214ENST00000622776 ANKRD24Q8TF21 1146 aa33.65■■■□□ 2.98
CPSF1-214ENST00000622776 IL2RBP14784 551 aa33.64■■■□□ 2.98
CPSF1-214ENST00000622776 LTN1O94822 1766 aa33.64■■■□□ 2.98
CPSF1-214ENST00000622776 CASZ1Q86V15 1759 aa33.63■■■□□ 2.97
CPSF1-214ENST00000622776 STK32BQ9NY57 414 aa33.63■■■□□ 2.97
CPSF1-214ENST00000622776 ACSBG1Q96GR2 724 aa33.61■■■□□ 2.97
CPSF1-214ENST00000622776 ZBTB7AO95365 584 aa33.6■■■□□ 2.97
CPSF1-214ENST00000622776 SLC15A2Q16348 729 aa33.6■■■□□ 2.97
CPSF1-214ENST00000622776 KAT6BQ8WYB5 2073 aa33.57■■■□□ 2.97
CPSF1-214ENST00000622776 DCAF8L1A6NGE4 600 aa33.57■■■□□ 2.96
CPSF1-214ENST00000622776 TESK2Q96S53 571 aa33.57■■■□□ 2.96
CPSF1-214ENST00000622776 NHSQ6T4R5 1651 aa33.57■■■□□ 2.96
CPSF1-214ENST00000622776 YY1P25490 414 aa33.56■■■□□ 2.96
CPSF1-214ENST00000622776 IP6K1Q92551 441 aa33.56■■■□□ 2.96
CPSF1-214ENST00000622776 ST20-MTHFSA0A0A6YYL1 179 aa33.55■■■□□ 2.96
CPSF1-214ENST00000622776 ATF5Q9Y2D1 282 aaPredicted RBP33.54■■■□□ 2.96
CPSF1-214ENST00000622776 PTGER2P43116 358 aa33.53■■■□□ 2.96
CPSF1-214ENST00000622776 LTV1Q96GA3 475 aaPredicted RBP33.51■■■□□ 2.95
CPSF1-214ENST00000622776 SLC24A1O60721 1099 aa33.49■■■□□ 2.95
CPSF1-214ENST00000622776 COG3Q96JB2 828 aa33.49■■■□□ 2.95
CPSF1-214ENST00000622776 MTFR1LQ9H019 292 aa33.46■■■□□ 2.95
CPSF1-214ENST00000622776 MAP3K19Q56UN5 1328 aa33.46■■■□□ 2.95
CPSF1-214ENST00000622776 BTAF1O14981 1849 aa33.46■■■□□ 2.95
CPSF1-214ENST00000622776 DDX54Q8TDD1 881 aaKnown RBP33.45■■■□□ 2.95
CPSF1-214ENST00000622776 MYOM1P52179 1685 aa33.45■■■□□ 2.94
CPSF1-214ENST00000622776 FBLN1P23142 703 aa33.43■■■□□ 2.94
CPSF1-214ENST00000622776 HOXC9P31274 260 aa33.43■■■□□ 2.94
CPSF1-214ENST00000622776 AMPHP49418 695 aa33.42■■■□□ 2.94
CPSF1-214ENST00000622776 SGIP1Q9BQI5 828 aa33.41■■■□□ 2.94
CPSF1-214ENST00000622776 LRRC4BQ9NT99 713 aa33.41■■■□□ 2.94
CPSF1-214ENST00000622776 PAPPAQ13219 1627 aa33.41■■■□□ 2.94
CPSF1-214ENST00000622776 FAM208AQ9UK61 1670 aaKnown RBP33.41■■■□□ 2.94
CPSF1-214ENST00000622776 ANKRD36BQ8N2N9 1353 aa33.4■■■□□ 2.94
CPSF1-214ENST00000622776 FHDC1Q9C0D6 1143 aaPredicted RBP33.39■■■□□ 2.94
CPSF1-214ENST00000622776 ZNF827Q17R98 1081 aa33.38■■■□□ 2.93
CPSF1-214ENST00000622776 SYT17Q9BSW7 474 aa33.38■■■□□ 2.93
CPSF1-214ENST00000622776 TMF1P82094 1093 aa33.34■■■□□ 2.93
CPSF1-214ENST00000622776 SLC27A3Q5K4L6 730 aa33.34■■■□□ 2.93
CPSF1-214ENST00000622776 FYB1O15117 783 aa33.33■■■□□ 2.93
CPSF1-214ENST00000622776 ZCRB1Q8TBF4 217 aaKnown RBP33.33■■■□□ 2.93
CPSF1-214ENST00000622776 PRIM1P49642 420 aaKnown RBP33.32■■■□□ 2.92
CPSF1-214ENST00000622776 RRS1Q15050 365 aaKnown RBP33.32■■■□□ 2.92
CPSF1-214ENST00000622776 AKT1S1Q96B36 256 aa33.32■■■□□ 2.92
CPSF1-214ENST00000622776 SYTL4Q96C24 671 aaPredicted RBP33.32■■■□□ 2.92
CPSF1-214ENST00000622776 GGNBP2Q9H3C7 697 aa33.32■■■□□ 2.92
CPSF1-214ENST00000622776 ARXQ96QS3 562 aa33.31■■■□□ 2.92
CPSF1-214ENST00000622776 RTL1A6NKG5 1358 aa33.31■■■□□ 2.92
CPSF1-214ENST00000622776 USP47Q96K76 1375 aa33.3■■■□□ 2.92
CPSF1-214ENST00000622776 RGPD2P0DJD1 1756 aa33.29■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms