RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 CARNS1A5YM72 827 aa8.77□□□□□ -1.01
CPNE3-213ENST00000622183 AGERQ15109 404 aa8.77□□□□□ -1.01
CPNE3-213ENST00000622183 C4orf48Q5BLP8 95 aa8.77□□□□□ -1.01
CPNE3-213ENST00000622183 FOXJ1Q92949 421 aa8.77□□□□□ -1.01
CPNE3-213ENST00000622183 C1QTNF2Q9BXJ5 285 aa8.77□□□□□ -1.01
CPNE3-213ENST00000622183 ZMIZ1Q9ULJ6 1067 aa8.77□□□□□ -1.01
CPNE3-213ENST00000622183 ATP5J2-PTCD1G3V325 749 aa8.76□□□□□ -1.01
CPNE3-213ENST00000622183 ITGBL1O95965 494 aaPredicted RBP8.76□□□□□ -1.01
CPNE3-213ENST00000622183 TRAF7Q6Q0C0 670 aa8.76□□□□□ -1.01
CPNE3-213ENST00000622183 HCSTQ9UBK5 93 aa8.76□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L15C9J2P7 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L10C9JJH3 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L13C9JLJ4 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L12C9JPN9 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L11C9JVI0 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L21D6R901 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L18D6R9N7 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L22D6RA61 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L17D6RBQ6 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L19D6RCP7 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L20D6RJB6 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 KCNC4Q03721 635 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 USP17L24Q0WX57 530 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 EML3Q32P44 896 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 CRTC2Q53ET0 693 aaPredicted RBP8.75□□□□□ -1.01
CPNE3-213ENST00000622183 STK32AQ8WU08 396 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 SLC10A4Q96EP9 437 aa8.75□□□□□ -1.01
CPNE3-213ENST00000622183 NOVA2Q9UNW9 492 aaKnown RBP8.75□□□□□ -1.01
CPNE3-213ENST00000622183 GIGYF1O75420 1035 aaPredicted RBP8.74□□□□□ -1.01
CPNE3-213ENST00000622183 RASA1P20936 1047 aa8.74□□□□□ -1.01
CPNE3-213ENST00000622183 SH3BP2P78314 561 aa8.74□□□□□ -1.01
CPNE3-213ENST00000622183 PTK7Q13308 1070 aa8.74□□□□□ -1.01
CPNE3-213ENST00000622183 NBPF20Q3BBV1 942 aa8.74□□□□□ -1.01
CPNE3-213ENST00000622183 TMEM164Q5U3C3 297 aa8.74□□□□□ -1.01
CPNE3-213ENST00000622183 RNF20Q5VTR2 975 aa8.74□□□□□ -1.01
CPNE3-213ENST00000622183 LARP1Q6PKG0 1096 aaKnown RBP8.74□□□□□ -1.01
CPNE3-213ENST00000622183 TRMT44Q8IYL2 757 aaKnown RBP8.74□□□□□ -1.01
CPNE3-213ENST00000622183 CCDC85AQ96PX6 553 aaPredicted RBP8.74□□□□□ -1.01
CPNE3-213ENST00000622183 TSGA10IPQ3SY00 556 aa8.73□□□□□ -1.01
CPNE3-213ENST00000622183 TRIM50Q86XT4 487 aa8.73□□□□□ -1.01
CPNE3-213ENST00000622183 CDV3Q9UKY7 258 aaKnown RBP8.73□□□□□ -1.01
CPNE3-213ENST00000622183 DOLKQ9UPQ8 538 aa8.73□□□□□ -1.01
CPNE3-213ENST00000622183 ESPNB1AK53 854 aa8.72□□□□□ -1.01
CPNE3-213ENST00000622183 RNF223E7ERA6 249 aa8.72□□□□□ -1.01
CPNE3-213ENST00000622183 TRIM32Q13049 653 aa8.72□□□□□ -1.01
CPNE3-213ENST00000622183 B4GALNT3Q6L9W6 998 aa8.72□□□□□ -1.01
CPNE3-213ENST00000622183 ANKLE1Q8NAG6 615 aa8.72□□□□□ -1.01
CPNE3-213ENST00000622183 GZF1Q9H116 711 aaPredicted RBP8.72□□□□□ -1.01
CPNE3-213ENST00000622183 NOD1Q9Y239 953 aa8.72□□□□□ -1.01
CPNE3-213ENST00000622183 PPEF1O14829 653 aaPredicted RBP8.71□□□□□ -1.02
CPNE3-213ENST00000622183 ZBTB24O43167 697 aaPredicted RBP8.71□□□□□ -1.02
CPNE3-213ENST00000622183 GGCXP38435 758 aa8.71□□□□□ -1.02
CPNE3-213ENST00000622183 CCDC125Q86Z20 511 aa8.71□□□□□ -1.02
CPNE3-213ENST00000622183 SEPT12Q8IYM1 358 aa8.71□□□□□ -1.02
CPNE3-213ENST00000622183 OGFOD1Q8N543 542 aa8.71□□□□□ -1.02
CPNE3-213ENST00000622183 PCDH10Q9P2E7 1040 aa8.71□□□□□ -1.02
CPNE3-213ENST00000622183 ATP1A2P50993 1020 aa8.7□□□□□ -1.02
CPNE3-213ENST00000622183 WNT7BP56706 349 aa8.7□□□□□ -1.02
CPNE3-213ENST00000622183 CLDN10P78369 228 aa8.7□□□□□ -1.02
CPNE3-213ENST00000622183 ANKMY2Q8IV38 441 aa8.7□□□□□ -1.02
CPNE3-213ENST00000622183 FAM200AQ8TCP9 573 aa8.7□□□□□ -1.02
CPNE3-213ENST00000622183 CDCA7Q9BWT1 371 aaPredicted RBP8.7□□□□□ -1.02
CPNE3-213ENST00000622183 FAM69CQ0P6D2 419 aa8.69□□□□□ -1.02
CPNE3-213ENST00000622183 OXLD1Q5BKU9 147 aa8.69□□□□□ -1.02
CPNE3-213ENST00000622183 PLA2G2CQ5R387 149 aa8.69□□□□□ -1.02
CPNE3-213ENST00000622183 TMCO4Q5TGY1 634 aa8.69□□□□□ -1.02
CPNE3-213ENST00000622183 LARGE2Q8N3Y3 721 aa8.69□□□□□ -1.02
CPNE3-213ENST00000622183 RNF166Q96A37 237 aaPredicted RBP8.69□□□□□ -1.02
CPNE3-213ENST00000622183 DNAAF2Q9NVR5 837 aaKnown RBP8.69□□□□□ -1.02
CPNE3-213ENST00000622183 VARSP26640 1264 aaKnown RBP8.68□□□□□ -1.02
CPNE3-213ENST00000622183 RPIAP49247 311 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 GTF2IP78347 998 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 SKOR1P84550 965 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 DPYDQ12882 1025 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 SIX5Q8N196 739 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 CLP1Q92989 425 aaKnown RBP8.67□□□□□ -1.02
CPNE3-213ENST00000622183 SIRT1Q96EB6 747 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 ZNF594Q96JF6 807 aaPredicted RBP8.67□□□□□ -1.02
CPNE3-213ENST00000622183 GNEQ9Y223 722 aaKnown RBP8.67□□□□□ -1.02
CPNE3-213ENST00000622183 MAP4K5Q9Y4K4 846 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 PCDHB11Q9Y5F2 797 aa8.67□□□□□ -1.02
CPNE3-213ENST00000622183 USP4Q13107 963 aa8.66□□□□□ -1.02
CPNE3-213ENST00000622183 SWI5Q1ZZU3 235 aa8.66□□□□□ -1.02
CPNE3-213ENST00000622183 KCTD15Q96SI1 283 aaPredicted RBP8.66□□□□□ -1.02
CPNE3-213ENST00000622183 IVNS1ABPQ9Y6Y0 642 aa8.66□□□□□ -1.02
CPNE3-213ENST00000622183 ZBTB7BO15156 539 aaPredicted RBP8.65□□□□□ -1.02
CPNE3-213ENST00000622183 DKK1O94907 266 aa8.65□□□□□ -1.02
CPNE3-213ENST00000622183 PHLDB3Q6NSJ2 640 aa8.65□□□□□ -1.02
CPNE3-213ENST00000622183 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.65□□□□□ -1.02
CPNE3-213ENST00000622183 KIAA1024Q9UPX6 916 aa8.65□□□□□ -1.02
CPNE3-213ENST00000622183 PCDHGA11Q9Y5H2 935 aa8.65□□□□□ -1.02
CPNE3-213ENST00000622183 SSFA2P28290 1259 aa8.64□□□□□ -1.03
CPNE3-213ENST00000622183 PPP1R18Q6NYC8 613 aa8.64□□□□□ -1.03
CPNE3-213ENST00000622183 SPNS2Q8IVW8 549 aa8.64□□□□□ -1.03
CPNE3-213ENST00000622183 SLAIN2Q9P270 581 aa8.64□□□□□ -1.03
CPNE3-213ENST00000622183 INTS6LQ5JSJ4 861 aaKnown RBP8.63□□□□□ -1.03
CPNE3-213ENST00000622183 VASH1Q7L8A9 365 aaPredicted RBP8.63□□□□□ -1.03
CPNE3-213ENST00000622183 CD2BP2O95400 341 aaKnown RBP8.62□□□□□ -1.03
CPNE3-213ENST00000622183 MFAP1P55081 439 aaKnown RBP8.62□□□□□ -1.03
CPNE3-213ENST00000622183 SEC13P55735 322 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms