RNA–Protein interactions for RNA: ENST00000620675.4

NEK3-210, Transcript of NIMA related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene NEK3, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-210ENST00000620675 BTG4Q9NY30 223 aa18.53■□□□□ 0.56
NEK3-210ENST00000620675 PRKRIP1Q9H875 184 aaPredicted RBP18.53■□□□□ 0.56
NEK3-210ENST00000620675 BCL9LQ86UU0 1499 aa18.52■□□□□ 0.56
NEK3-210ENST00000620675 PPP2R1AP30153 589 aa18.52■□□□□ 0.56
NEK3-210ENST00000620675 HOXC9P31274 260 aa18.52■□□□□ 0.56
NEK3-210ENST00000620675 HSP90AB2PQ58FF8 381 aa18.52■□□□□ 0.56
NEK3-210ENST00000620675 AFF2P51816 1311 aa18.52■□□□□ 0.56
NEK3-210ENST00000620675 AMPHP49418 695 aa18.51■□□□□ 0.55
NEK3-210ENST00000620675 MTHFSP49914 203 aa18.51■□□□□ 0.55
NEK3-210ENST00000620675 FNBP4Q8N3X1 1017 aaPredicted RBP18.5■□□□□ 0.55
NEK3-210ENST00000620675 IP6K1Q92551 441 aa18.5■□□□□ 0.55
NEK3-210ENST00000620675 RGS17Q9UGC6 210 aaPredicted RBP18.5■□□□□ 0.55
NEK3-210ENST00000620675 SMG6Q86US8 1419 aaKnown RBP18.5■□□□□ 0.55
NEK3-210ENST00000620675 COL5A2P05997 1499 aaPredicted RBP18.49■□□□□ 0.55
NEK3-210ENST00000620675 LTV1Q96GA3 475 aaPredicted RBP18.49■□□□□ 0.55
NEK3-210ENST00000620675 STRN4Q9NRL3 753 aa18.49■□□□□ 0.55
NEK3-210ENST00000620675 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.48■□□□□ 0.55
NEK3-210ENST00000620675 DIEXFQ68CQ4 756 aaKnown RBP18.48■□□□□ 0.55
NEK3-210ENST00000620675 FLT4P35916 1363 aa18.48■□□□□ 0.55
NEK3-210ENST00000620675 RALBP1Q15311 655 aa18.47■□□□□ 0.55
NEK3-210ENST00000620675 USP21Q9UK80 565 aa18.47■□□□□ 0.55
NEK3-210ENST00000620675 ABCC6O95255 1503 aa18.46■□□□□ 0.55
NEK3-210ENST00000620675 RTL1A6NKG5 1358 aa18.46■□□□□ 0.55
NEK3-210ENST00000620675 LARP1Q6PKG0 1096 aaKnown RBP18.46■□□□□ 0.55
NEK3-210ENST00000620675 CDK12Q9NYV4 1490 aaPredicted RBP18.46■□□□□ 0.55
NEK3-210ENST00000620675 ERBB3P21860 1342 aa18.45■□□□□ 0.54
NEK3-210ENST00000620675 COL3A1P02461 1466 aaPredicted RBP18.45■□□□□ 0.54
NEK3-210ENST00000620675 CCDC184Q52MB2 194 aa18.45■□□□□ 0.54
NEK3-210ENST00000620675 UNC5CLQ8IV45 518 aa18.45■□□□□ 0.54
NEK3-210ENST00000620675 ANKRD24Q8TF21 1146 aa18.45■□□□□ 0.54
NEK3-210ENST00000620675 BLMP54132 1417 aaPredicted RBP18.45■□□□□ 0.54
NEK3-210ENST00000620675 INSRP06213 1382 aa18.44■□□□□ 0.54
NEK3-210ENST00000620675 ANP32CO43423 234 aa18.43■□□□□ 0.54
NEK3-210ENST00000620675 MYBBP1AQ9BQG0 1328 aaKnown RBP18.43■□□□□ 0.54
NEK3-210ENST00000620675 EIF4A2Q14240 407 aaKnown RBP18.43■□□□□ 0.54
NEK3-210ENST00000620675 KIF24Q5T7B8 1368 aa18.43■□□□□ 0.54
NEK3-210ENST00000620675 EVA1CP58658 441 aa18.42■□□□□ 0.54
NEK3-210ENST00000620675 USP35Q9P2H5 1018 aa18.42■□□□□ 0.54
NEK3-210ENST00000620675 GLI3P10071 1580 aa18.41■□□□□ 0.54
NEK3-210ENST00000620675 WDR17Q8IZU2 1322 aa18.41■□□□□ 0.54
NEK3-210ENST00000620675 POTEAQ6S8J7 498 aa18.41■□□□□ 0.54
NEK3-210ENST00000620675 USHBP1Q8N6Y0 703 aa18.41■□□□□ 0.54
NEK3-210ENST00000620675 PHF23Q9BUL5 403 aaPredicted RBP18.41■□□□□ 0.54
NEK3-210ENST00000620675 ATRNO75882 1429 aa18.41■□□□□ 0.54
NEK3-210ENST00000620675 FAM208AQ9UK61 1670 aaKnown RBP18.4■□□□□ 0.54
NEK3-210ENST00000620675 CSB-PGBD3P0DP91 1061 aa18.4■□□□□ 0.54
NEK3-210ENST00000620675 QTRT2Q9H974 415 aaKnown RBP18.4■□□□□ 0.54
NEK3-210ENST00000620675 RGPD1P0DJD0 1748 aa18.4■□□□□ 0.54
NEK3-210ENST00000620675 NBPF6Q5VWK0 638 aa18.4■□□□□ 0.54
NEK3-210ENST00000620675 NBPF4Q96M43 638 aa18.4■□□□□ 0.54
NEK3-210ENST00000620675 EP400Q96L91 3159 aa18.39■□□□□ 0.53
NEK3-210ENST00000620675 IL13P35225 146 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 TOM1L2Q6ZVM7 507 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 NLRP2Q9NX02 1062 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 CCDC9Q9Y3X0 531 aaKnown RBP18.38■□□□□ 0.53
NEK3-210ENST00000620675 CRB1P82279 1406 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 VPS72Q15906 364 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 WNK3Q9BYP7 1800 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 SPATA31A5Q5VU36 1347 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 SPATA31A7Q8IWB4 1347 aa18.38■□□□□ 0.53
NEK3-210ENST00000620675 EYA1Q99502 592 aa18.37■□□□□ 0.53
NEK3-210ENST00000620675 MIER1Q8N108 512 aa18.37■□□□□ 0.53
NEK3-210ENST00000620675 SPATA31A1Q5TZJ5 1347 aa18.36■□□□□ 0.53
NEK3-210ENST00000620675 ZNF772Q68DY9 489 aaPredicted RBP18.36■□□□□ 0.53
NEK3-210ENST00000620675 TRPC5Q9UL62 973 aaPredicted RBP18.36■□□□□ 0.53
NEK3-210ENST00000620675 DIAPH1O60610 1272 aaKnown RBP18.35■□□□□ 0.53
NEK3-210ENST00000620675 AEBP1Q8IUX7 1158 aa18.35■□□□□ 0.53
NEK3-210ENST00000620675 GJD4Q96KN9 370 aaPredicted RBP18.35■□□□□ 0.53
NEK3-210ENST00000620675 CARD10Q9BWT7 1032 aa18.34■□□□□ 0.53
NEK3-210ENST00000620675 BRWD3Q6RI45 1802 aa18.33■□□□□ 0.53
NEK3-210ENST00000620675 FAM98CQ17RN3 349 aaKnown RBP18.33■□□□□ 0.52
NEK3-210ENST00000620675 IGSF1Q8N6C5 1336 aa18.32■□□□□ 0.52
NEK3-210ENST00000620675 CFAP53Q96M91 514 aa18.32■□□□□ 0.52
NEK3-210ENST00000620675 NCAPD2Q15021 1401 aa18.32■□□□□ 0.52
NEK3-210ENST00000620675 U2SURPO15042 1029 aaKnown RBP18.32■□□□□ 0.52
NEK3-210ENST00000620675 HMOX1P09601 288 aa18.32■□□□□ 0.52
NEK3-210ENST00000620675 MEGF6O75095 1541 aa18.31■□□□□ 0.52
NEK3-210ENST00000620675 TCP11L2Q8N4U5 519 aa18.3■□□□□ 0.52
NEK3-210ENST00000620675 THSD7AQ9UPZ6 1657 aa18.3■□□□□ 0.52
NEK3-210ENST00000620675 SULT6B1Q6IMI4 303 aa18.29■□□□□ 0.52
NEK3-210ENST00000620675 SHANK3Q9BYB0 1731 aa18.29■□□□□ 0.52
NEK3-210ENST00000620675 RBM6P78332 1123 aaKnown RBP18.29■□□□□ 0.52
NEK3-210ENST00000620675 MRS2Q9HD23 443 aa18.29■□□□□ 0.52
NEK3-210ENST00000620675 DISP2A7MBM2 1401 aa18.29■□□□□ 0.52
NEK3-210ENST00000620675 KAT6BQ8WYB5 2073 aa18.28■□□□□ 0.52
NEK3-210ENST00000620675 LRRC37A3O60309 1634 aa18.28■□□□□ 0.52
NEK3-210ENST00000620675 PARP4Q9UKK3 1724 aaKnown RBP18.28■□□□□ 0.52
NEK3-210ENST00000620675 RXRBP28702 533 aa18.27■□□□□ 0.52
NEK3-210ENST00000620675 U2AF1L5P0DN76 240 aaPredicted RBP18.27■□□□□ 0.51
NEK3-210ENST00000620675 U2AF1Q01081 240 aaKnown RBP eCLIP18.27■□□□□ 0.51
NEK3-210ENST00000620675 KDRP35968 1356 aa18.26■□□□□ 0.51
NEK3-210ENST00000620675 RGS12O14924 1447 aa18.26■□□□□ 0.51
NEK3-210ENST00000620675 BARGINQ6ZT62 677 aa18.26■□□□□ 0.51
NEK3-210ENST00000620675 A0A0G2JS52 829 aa18.24■□□□□ 0.51
NEK3-210ENST00000620675 ONECUT3O60422 494 aaPredicted RBP18.24■□□□□ 0.51
NEK3-210ENST00000620675 IL2RBP14784 551 aa18.24■□□□□ 0.51
NEK3-210ENST00000620675 MYT1Q01538 1121 aa18.24■□□□□ 0.51
NEK3-210ENST00000620675 SEPT12Q8IYM1 358 aa18.24■□□□□ 0.51
NEK3-210ENST00000620675 THRAP3Q9Y2W1 955 aaKnown RBP18.24■□□□□ 0.51
NEK3-210ENST00000620675 PKD1L3Q7Z443 1732 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms