RNA–Protein interactions for RNA: ENST00000616383.1

MMP28-206, Transcript of matrix metallopeptidase 28, humanhuman

TSL 3

Gene MMP28, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-206ENST00000616383 KRT28Q7Z3Y7 464 aa14.84□□□□□ -0.03
MMP28-206ENST00000616383 DDX17Q92841 729 aaKnown RBP14.84□□□□□ -0.03
MMP28-206ENST00000616383 PHRF1Q9P1Y6 1649 aaKnown RBP14.84□□□□□ -0.03
MMP28-206ENST00000616383 USP31Q70CQ4 1352 aa14.84□□□□□ -0.03
MMP28-206ENST00000616383 LTN1O94822 1766 aa14.83□□□□□ -0.03
MMP28-206ENST00000616383 HSPA1LP34931 641 aa14.83□□□□□ -0.04
MMP28-206ENST00000616383 TNNT2P45379 298 aaPredicted RBP14.83□□□□□ -0.04
MMP28-206ENST00000616383 PIP4K2BP78356 416 aa14.83□□□□□ -0.04
MMP28-206ENST00000616383 NLRP13Q86W25 1043 aa14.83□□□□□ -0.04
MMP28-206ENST00000616383 COG3Q96JB2 828 aa14.83□□□□□ -0.04
MMP28-206ENST00000616383 PHLPP1O60346 1717 aa14.83□□□□□ -0.04
MMP28-206ENST00000616383 ABCA3Q99758 1704 aa14.83□□□□□ -0.04
MMP28-206ENST00000616383 TNS3Q68CZ2 1445 aa14.83□□□□□ -0.04
MMP28-206ENST00000616383 CCDC184Q52MB2 194 aa14.82□□□□□ -0.04
MMP28-206ENST00000616383 SBNO1A3KN83 1393 aa14.82□□□□□ -0.04
MMP28-206ENST00000616383 MED1Q15648 1581 aaPredicted RBP14.81□□□□□ -0.04
MMP28-206ENST00000616383 ABTB2Q8N961 1025 aa14.81□□□□□ -0.04
MMP28-206ENST00000616383 MRS2Q9HD23 443 aa14.81□□□□□ -0.04
MMP28-206ENST00000616383 SLIT3O75094 1523 aa14.81□□□□□ -0.04
MMP28-206ENST00000616383 SHPRHQ149N8 1683 aa14.81□□□□□ -0.04
MMP28-206ENST00000616383 NUTM2GQ5VZR2 741 aa14.8□□□□□ -0.04
MMP28-206ENST00000616383 COL16A1Q07092 1604 aaPredicted RBP14.8□□□□□ -0.04
MMP28-206ENST00000616383 PEAK1Q9H792 1746 aa14.8□□□□□ -0.04
MMP28-206ENST00000616383 TOM1O60784 492 aa14.79□□□□□ -0.04
MMP28-206ENST00000616383 NFAT5O94916 1531 aa14.79□□□□□ -0.04
MMP28-206ENST00000616383 NLRP6P59044 892 aa14.79□□□□□ -0.04
MMP28-206ENST00000616383 SOS2Q07890 1332 aaPredicted RBP14.79□□□□□ -0.04
MMP28-206ENST00000616383 SMG6Q86US8 1419 aaKnown RBP14.79□□□□□ -0.04
MMP28-206ENST00000616383 AATKQ6ZMQ8 1374 aa14.78□□□□□ -0.04
MMP28-206ENST00000616383 SPATA31A3Q5VYP0 1347 aa14.77□□□□□ -0.04
MMP28-206ENST00000616383 LMOD2Q6P5Q4 547 aa14.77□□□□□ -0.05
MMP28-206ENST00000616383 COL3A1P02461 1466 aaPredicted RBP14.76□□□□□ -0.05
MMP28-206ENST00000616383 CDK12Q9NYV4 1490 aaPredicted RBP14.76□□□□□ -0.05
MMP28-206ENST00000616383 ARHGEF10O15013 1369 aa14.76□□□□□ -0.05
MMP28-206ENST00000616383 USP19O94966 1318 aa14.75□□□□□ -0.05
MMP28-206ENST00000616383 COL22A1Q8NFW1 1626 aaPredicted RBP14.75□□□□□ -0.05
MMP28-206ENST00000616383 SOX12O15370 315 aa14.75□□□□□ -0.05
MMP28-206ENST00000616383 FBLN1P23142 703 aa14.75□□□□□ -0.05
MMP28-206ENST00000616383 GALR2O43603 387 aaPredicted RBP14.74□□□□□ -0.05
MMP28-206ENST00000616383 MTHFSP49914 203 aa14.74□□□□□ -0.05
MMP28-206ENST00000616383 RRS1Q15050 365 aaKnown RBP14.73□□□□□ -0.05
MMP28-206ENST00000616383 POLKQ9UBT6 870 aa14.73□□□□□ -0.05
MMP28-206ENST00000616383 EMILIN1Q9Y6C2 1016 aa14.73□□□□□ -0.05
MMP28-206ENST00000616383 RGPD5Q99666 1765 aa14.73□□□□□ -0.05
MMP28-206ENST00000616383 PLEKHG5O94827 1062 aa14.72□□□□□ -0.05
MMP28-206ENST00000616383 CFAP53Q96M91 514 aa14.72□□□□□ -0.05
MMP28-206ENST00000616383 MAP3K19Q56UN5 1328 aa14.7□□□□□ -0.06
MMP28-206ENST00000616383 PPM1GO15355 546 aaPredicted RBP14.7□□□□□ -0.06
MMP28-206ENST00000616383 KCNH5Q8NCM2 988 aa14.7□□□□□ -0.06
MMP28-206ENST00000616383 PNISRQ8TF01 805 aaKnown RBP14.7□□□□□ -0.06
MMP28-206ENST00000616383 INSRP06213 1382 aa14.7□□□□□ -0.06
MMP28-206ENST00000616383 PNPLA6Q8IY17 1366 aa14.7□□□□□ -0.06
MMP28-206ENST00000616383 COL18A1P39060 1754 aa14.7□□□□□ -0.06
MMP28-206ENST00000616383 RGPD1P0DJD0 1748 aa14.69□□□□□ -0.06
MMP28-206ENST00000616383 FAM9BQ8IZU0 186 aa14.69□□□□□ -0.06
MMP28-206ENST00000616383 PHF12Q96QT6 1004 aa14.69□□□□□ -0.06
MMP28-206ENST00000616383 RTL1A6NKG5 1358 aa14.69□□□□□ -0.06
MMP28-206ENST00000616383 FLT4P35916 1363 aa14.69□□□□□ -0.06
MMP28-206ENST00000616383 GCP02774 474 aa14.68□□□□□ -0.06
MMP28-206ENST00000616383 CABLES1Q8TDN4 633 aa14.68□□□□□ -0.06
MMP28-206ENST00000616383 LRRC59Q96AG4 307 aaKnown RBP14.68□□□□□ -0.06
MMP28-206ENST00000616383 KIF24Q5T7B8 1368 aa14.68□□□□□ -0.06
MMP28-206ENST00000616383 RGPD2P0DJD1 1756 aa14.68□□□□□ -0.06
MMP28-206ENST00000616383 ABCC6O95255 1503 aa14.67□□□□□ -0.06
MMP28-206ENST00000616383 WDR43Q15061 677 aaKnown RBP eCLIP14.66□□□□□ -0.06
MMP28-206ENST00000616383 LMO7Q8WWI1 1683 aa14.65□□□□□ -0.06
MMP28-206ENST00000616383 FAM208AQ9UK61 1670 aaKnown RBP14.65□□□□□ -0.06
MMP28-206ENST00000616383 ZBTB7CA1YPR0 619 aa14.65□□□□□ -0.06
MMP28-206ENST00000616383 DIAPH1O60610 1272 aaKnown RBP14.65□□□□□ -0.06
MMP28-206ENST00000616383 AMPHP49418 695 aa14.65□□□□□ -0.06
MMP28-206ENST00000616383 YTHDC1Q96MU7 727 aaKnown RBP14.65□□□□□ -0.06
MMP28-206ENST00000616383 BLMP54132 1417 aaPredicted RBP14.65□□□□□ -0.06
MMP28-206ENST00000616383 HOXC9P31274 260 aa14.64□□□□□ -0.07
MMP28-206ENST00000616383 ARHGEF25Q86VW2 580 aa14.64□□□□□ -0.07
MMP28-206ENST00000616383 CPDO75976 1380 aa14.63□□□□□ -0.07
MMP28-206ENST00000616383 COL14A1Q05707 1796 aaKnown RBP14.63□□□□□ -0.07
MMP28-206ENST00000616383 PLCH1Q4KWH8 1693 aa14.63□□□□□ -0.07
MMP28-206ENST00000616383 CAMTA1Q9Y6Y1 1673 aa14.63□□□□□ -0.07
MMP28-206ENST00000616383 HAP1P54257 671 aaPredicted RBP14.63□□□□□ -0.07
MMP28-206ENST00000616383 ZC3H6P61129 1189 aaKnown RBP14.63□□□□□ -0.07
MMP28-206ENST00000616383 HSP90AB2PQ58FF8 381 aa14.63□□□□□ -0.07
MMP28-206ENST00000616383 KIAA0232Q92628 1395 aa14.62□□□□□ -0.07
MMP28-206ENST00000616383 IP6K1Q92551 441 aa14.62□□□□□ -0.07
MMP28-206ENST00000616383 ADAMTS8Q9UP79 889 aa14.62□□□□□ -0.07
MMP28-206ENST00000616383 NUDCQ9Y266 331 aa14.62□□□□□ -0.07
MMP28-206ENST00000616383 U2SURPO15042 1029 aaKnown RBP14.61□□□□□ -0.07
MMP28-206ENST00000616383 IL13P35225 146 aa14.61□□□□□ -0.07
MMP28-206ENST00000616383 EIF4A2Q14240 407 aaKnown RBP14.61□□□□□ -0.07
MMP28-206ENST00000616383 U2AF1L5P0DN76 240 aaPredicted RBP14.6□□□□□ -0.07
MMP28-206ENST00000616383 U2AF1Q01081 240 aaKnown RBP eCLIP14.6□□□□□ -0.07
MMP28-206ENST00000616383 JCADQ9P266 1359 aa14.6□□□□□ -0.07
MMP28-206ENST00000616383 CHRNA2Q15822 529 aa14.58□□□□□ -0.08
MMP28-206ENST00000616383 LTV1Q96GA3 475 aaPredicted RBP14.58□□□□□ -0.08
MMP28-206ENST00000616383 PRDM11Q9NQV5 511 aa14.58□□□□□ -0.08
MMP28-206ENST00000616383 NRAPQ86VF7 1730 aa14.58□□□□□ -0.08
MMP28-206ENST00000616383 HNRNPUQ00839 825 aaKnown RBP eCLIP14.57□□□□□ -0.08
MMP28-206ENST00000616383 DLG5Q8TDM6 1919 aa14.56□□□□□ -0.08
MMP28-206ENST00000616383 NWD2Q9ULI1 1742 aa14.56□□□□□ -0.08
MMP28-206ENST00000616383 CCDC146Q8IYE0 955 aa14.56□□□□□ -0.08
MMP28-206ENST00000616383 AXIN2Q9Y2T1 843 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms