RNA–Protein interactions for RNA: ENST00000616033.4

MSH6-214, Transcript of mutS homolog 6, humanhuman

TSL 5 BASIC

Gene MSH6, Length 3,429 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-214ENST00000616033 NUCB2P80303 420 aa16.14■□□□□ 0.17
MSH6-214ENST00000616033 ABCC1P33527 1531 aa16.14■□□□□ 0.17
MSH6-214ENST00000616033 ZBTB7BO15156 539 aaPredicted RBP16.14■□□□□ 0.17
MSH6-214ENST00000616033 NEK4P51957 841 aa16.14■□□□□ 0.17
MSH6-214ENST00000616033 PTPRTO14522 1441 aa16.13■□□□□ 0.17
MSH6-214ENST00000616033 NOS1P29475 1434 aa16.13■□□□□ 0.17
MSH6-214ENST00000616033 FAM83GA6ND36 823 aa16.13■□□□□ 0.17
MSH6-214ENST00000616033 LARP6Q9BRS8 491 aaKnown RBP16.13■□□□□ 0.17
MSH6-214ENST00000616033 MADDQ8WXG6 1647 aa16.13■□□□□ 0.17
MSH6-214ENST00000616033 ST18O60284 1047 aa16.12■□□□□ 0.17
MSH6-214ENST00000616033 NOL7Q9UMY1 257 aaKnown RBP16.12■□□□□ 0.17
MSH6-214ENST00000616033 ATP10AO60312 1499 aa16.12■□□□□ 0.17
MSH6-214ENST00000616033 PHACTR3Q96KR7 559 aa16.12■□□□□ 0.17
MSH6-214ENST00000616033 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.12■□□□□ 0.17
MSH6-214ENST00000616033 GTF2E1P29083 439 aaPredicted RBP16.12■□□□□ 0.17
MSH6-214ENST00000616033 RABEP1Q15276 862 aa16.12■□□□□ 0.17
MSH6-214ENST00000616033 GCC1Q96CN9 775 aa16.12■□□□□ 0.17
MSH6-214ENST00000616033 ZKSCAN5Q9Y2L8 839 aa16.12■□□□□ 0.17
MSH6-214ENST00000616033 PPIP5K1Q6PFW1 1433 aa16.11■□□□□ 0.17
MSH6-214ENST00000616033 KRT24Q2M2I5 525 aa16.11■□□□□ 0.17
MSH6-214ENST00000616033 SLC4A10Q6U841 1118 aa16.11■□□□□ 0.17
MSH6-214ENST00000616033 STAG3Q9UJ98 1225 aa16.11■□□□□ 0.17
MSH6-214ENST00000616033 MAST1Q9Y2H9 1570 aa16.11■□□□□ 0.17
MSH6-214ENST00000616033 EVC2Q86UK5 1308 aa16.11■□□□□ 0.17
MSH6-214ENST00000616033 NCOA3Q9Y6Q9 1424 aa16.1■□□□□ 0.17
MSH6-214ENST00000616033 SOX12O15370 315 aa16.1■□□□□ 0.17
MSH6-214ENST00000616033 MYOM1P52179 1685 aa16.1■□□□□ 0.17
MSH6-214ENST00000616033 PLEKHM2Q8IWE5 1019 aa16.1■□□□□ 0.17
MSH6-214ENST00000616033 TTC12Q9H892 705 aaPredicted RBP16.1■□□□□ 0.17
MSH6-214ENST00000616033 FBXO31Q5XUX0 539 aaPredicted RBP16.09■□□□□ 0.17
MSH6-214ENST00000616033 PLEKHF1Q96S99 279 aa16.09■□□□□ 0.17
MSH6-214ENST00000616033 LAMC1P11047 1609 aa16.09■□□□□ 0.17
MSH6-214ENST00000616033 SPDYE4A6NLX3 237 aa16.09■□□□□ 0.17
MSH6-214ENST00000616033 CDK11BP21127 795 aaKnown RBP16.09■□□□□ 0.17
MSH6-214ENST00000616033 UPF3BQ9BZI7 483 aaKnown RBP16.09■□□□□ 0.17
MSH6-214ENST00000616033 TWISTNBQ3B726 338 aaPredicted RBP16.09■□□□□ 0.17
MSH6-214ENST00000616033 SDSP20132 328 aa16.08■□□□□ 0.16
MSH6-214ENST00000616033 ZNF445P59923 1031 aa16.08■□□□□ 0.16
MSH6-214ENST00000616033 CASC1Q6TDU7 716 aa16.08■□□□□ 0.16
MSH6-214ENST00000616033 USP25Q9UHP3 1055 aa16.08■□□□□ 0.16
MSH6-214ENST00000616033 RILPL2Q969X0 211 aa16.08■□□□□ 0.16
MSH6-214ENST00000616033 CHMP3Q9Y3E7 222 aa16.08■□□□□ 0.16
MSH6-214ENST00000616033 IQGAP1P46940 1657 aa16.08■□□□□ 0.16
MSH6-214ENST00000616033 INTS3Q68E01 1043 aaKnown RBP16.07■□□□□ 0.16
MSH6-214ENST00000616033 C8orf58Q8NAV2 365 aa16.07■□□□□ 0.16
MSH6-214ENST00000616033 USP26Q9BXU7 913 aa16.07■□□□□ 0.16
MSH6-214ENST00000616033 ZNF518AQ6AHZ1 1483 aa16.07■□□□□ 0.16
MSH6-214ENST00000616033 ATP7AQ04656 1500 aa16.07■□□□□ 0.16
MSH6-214ENST00000616033 CT47B1P0C2W7 299 aaPredicted RBP16.07■□□□□ 0.16
MSH6-214ENST00000616033 CCDC39Q9UFE4 941 aa16.07■□□□□ 0.16
MSH6-214ENST00000616033 ZDHHC9Q9Y397 364 aa16.07■□□□□ 0.16
MSH6-214ENST00000616033 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.07■□□□□ 0.16
MSH6-214ENST00000616033 TRIM6-TRIM34B2RNG4 842 aa16.07■□□□□ 0.16
MSH6-214ENST00000616033 IQGAP3Q86VI3 1631 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 VAMP4O75379 141 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 ZMYM3Q14202 1370 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 LRSAM1Q6UWE0 723 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 STAC3Q96MF2 364 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 UNC13BO14795 1591 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 FYB1O15117 783 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 CEP152O94986 1710 aa16.06■□□□□ 0.16
MSH6-214ENST00000616033 PLXNC1O60486 1568 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 RNF17Q9BXT8 1623 aaKnown RBP16.05■□□□□ 0.16
MSH6-214ENST00000616033 GADD45BO75293 160 aaPredicted RBP16.05■□□□□ 0.16
MSH6-214ENST00000616033 CERS3Q8IU89 383 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 MRPL50Q8N5N7 158 aaKnown RBP16.05■□□□□ 0.16
MSH6-214ENST00000616033 KIAA2012Q0VF49 1180 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 TTC22Q5TAA0 569 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 ANO2Q9NQ90 1003 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 MBIPQ9NS73 344 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 CGNQ9P2M7 1197 aaKnown RBP16.05■□□□□ 0.16
MSH6-214ENST00000616033 ZFYVE16Q7Z3T8 1539 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 CLTCL1P53675 1640 aa16.05■□□□□ 0.16
MSH6-214ENST00000616033 SASS6Q6UVJ0 657 aa16.04■□□□□ 0.16
MSH6-214ENST00000616033 SPC24Q8NBT2 197 aa16.04■□□□□ 0.16
MSH6-214ENST00000616033 IQSEC2Q5JU85 1478 aa16.04■□□□□ 0.16
MSH6-214ENST00000616033 CSPP1Q1MSJ5 1256 aa16.04■□□□□ 0.16
MSH6-214ENST00000616033 TSPY26PQ9H489 355 aa16.04■□□□□ 0.16
MSH6-214ENST00000616033 NECTIN2Q92692 538 aa16.04■□□□□ 0.16
MSH6-214ENST00000616033 CABP1Q9NZU7 370 aa16.03■□□□□ 0.16
MSH6-214ENST00000616033 MIS18AQ9NYP9 233 aa16.03■□□□□ 0.16
MSH6-214ENST00000616033 ABCC11Q96J66 1382 aa16.03■□□□□ 0.16
MSH6-214ENST00000616033 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.03■□□□□ 0.16
MSH6-214ENST00000616033 ZNF500O60304 480 aaPredicted RBP16.03■□□□□ 0.16
MSH6-214ENST00000616033 EMILIN1Q9Y6C2 1016 aa16.03■□□□□ 0.16
MSH6-214ENST00000616033 IDI1Q13907 227 aa16.02■□□□□ 0.16
MSH6-214ENST00000616033 AEBP1Q8IUX7 1158 aa16.02■□□□□ 0.16
MSH6-214ENST00000616033 TMX3Q96JJ7 454 aa16.02■□□□□ 0.16
MSH6-214ENST00000616033 MAP7D2Q96T17 732 aa16.02■□□□□ 0.16
MSH6-214ENST00000616033 EXOC6BQ9Y2D4 811 aa16.02■□□□□ 0.16
MSH6-214ENST00000616033 MAP4K4O95819 1239 aaPredicted RBP16.02■□□□□ 0.15
MSH6-214ENST00000616033 ALDH1L2Q3SY69 923 aa16.01■□□□□ 0.15
MSH6-214ENST00000616033 DYNC1I1O14576 645 aa16.01■□□□□ 0.15
MSH6-214ENST00000616033 PPP4R3BQ5MIZ7 849 aa16.01■□□□□ 0.15
MSH6-214ENST00000616033 TRERF1Q96PN7 1200 aa16.01■□□□□ 0.15
MSH6-214ENST00000616033 HCLS1P14317 486 aaPredicted RBP16.01■□□□□ 0.15
MSH6-214ENST00000616033 C14orf93Q9H972 538 aaKnown RBP16.01■□□□□ 0.15
MSH6-214ENST00000616033 ZRANB1Q9UGI0 708 aa16.01■□□□□ 0.15
MSH6-214ENST00000616033 A0A1W2PP64 1363 aa16.01■□□□□ 0.15
MSH6-214ENST00000616033 PRAM1Q96QH2 718 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms