RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RSPH6AQ9H0K4 717 aa18.89■□□□□ 0.62
USP39-220ENST00000613444 FCHSD2O94868 740 aa18.89■□□□□ 0.61
USP39-220ENST00000613444 ARHGEF10O15013 1369 aa18.88■□□□□ 0.61
USP39-220ENST00000613444 ARHGEF25Q86VW2 580 aa18.88■□□□□ 0.61
USP39-220ENST00000613444 TCP11L2Q8N4U5 519 aa18.88■□□□□ 0.61
USP39-220ENST00000613444 NGEFQ8N5V2 710 aa18.86■□□□□ 0.61
USP39-220ENST00000613444 IP6K1Q92551 441 aa18.86■□□□□ 0.61
USP39-220ENST00000613444 AHDC1Q5TGY3 1603 aaPredicted RBP18.86■□□□□ 0.61
USP39-220ENST00000613444 HMOX1P09601 288 aa18.85■□□□□ 0.61
USP39-220ENST00000613444 PDE3BQ13370 1112 aa18.85■□□□□ 0.61
USP39-220ENST00000613444 PHF23Q9BUL5 403 aaPredicted RBP18.85■□□□□ 0.61
USP39-220ENST00000613444 RGPD5Q99666 1765 aa18.85■□□□□ 0.61
USP39-220ENST00000613444 ABCA3Q99758 1704 aa18.85■□□□□ 0.61
USP39-220ENST00000613444 COL18A1P39060 1754 aa18.85■□□□□ 0.61
USP39-220ENST00000613444 NCBP3Q53F19 620 aaKnown RBP18.84■□□□□ 0.61
USP39-220ENST00000613444 PRKAR2BP31323 418 aa18.83■□□□□ 0.61
USP39-220ENST00000613444 CDCA7LQ96GN5 454 aa18.83■□□□□ 0.61
USP39-220ENST00000613444 PLEKHG5O94827 1062 aa18.83■□□□□ 0.6
USP39-220ENST00000613444 PNNQ9H307 717 aaKnown RBP18.83■□□□□ 0.6
USP39-220ENST00000613444 RRP7AQ9Y3A4 280 aaKnown RBP18.83■□□□□ 0.6
USP39-220ENST00000613444 RGPD2P0DJD1 1756 aa18.83■□□□□ 0.6
USP39-220ENST00000613444 AEBP1Q8IUX7 1158 aa18.82■□□□□ 0.6
USP39-220ENST00000613444 CABLES1Q8TDN4 633 aa18.82■□□□□ 0.6
USP39-220ENST00000613444 KDRP35968 1356 aa18.82■□□□□ 0.6
USP39-220ENST00000613444 IGSF1Q8N6C5 1336 aa18.82■□□□□ 0.6
USP39-220ENST00000613444 DLG5Q8TDM6 1919 aa18.82■□□□□ 0.6
USP39-220ENST00000613444 TMPOP42166 694 aaKnown RBP18.81■□□□□ 0.6
USP39-220ENST00000613444 CCDC27Q2M243 656 aa18.81■□□□□ 0.6
USP39-220ENST00000613444 WWC1Q8IX03 1113 aa18.81■□□□□ 0.6
USP39-220ENST00000613444 PHACTR3Q96KR7 559 aa18.81■□□□□ 0.6
USP39-220ENST00000613444 EYA1Q99502 592 aa18.81■□□□□ 0.6
USP39-220ENST00000613444 SULT6B1Q6IMI4 303 aa18.81■□□□□ 0.6
USP39-220ENST00000613444 MAPK8IP3Q9UPT6 1336 aa18.8■□□□□ 0.6
USP39-220ENST00000613444 ZC3H6P61129 1189 aaKnown RBP18.79■□□□□ 0.6
USP39-220ENST00000613444 NEUROD2Q15784 382 aa18.79■□□□□ 0.6
USP39-220ENST00000613444 AXIN2Q9Y2T1 843 aa18.79■□□□□ 0.6
USP39-220ENST00000613444 CPDO75976 1380 aa18.79■□□□□ 0.6
USP39-220ENST00000613444 ABCC6O95255 1503 aa18.79■□□□□ 0.6
USP39-220ENST00000613444 GOLGA2Q08379 1002 aa18.78■□□□□ 0.6
USP39-220ENST00000613444 CAMTA1Q9Y6Y1 1673 aa18.77■□□□□ 0.6
USP39-220ENST00000613444 TRMT2AQ8IZ69 625 aaKnown RBP18.77■□□□□ 0.6
USP39-220ENST00000613444 SPINK5Q9NQ38 1064 aaPredicted RBP18.77■□□□□ 0.6
USP39-220ENST00000613444 TRIM35Q9UPQ4 493 aa18.77■□□□□ 0.6
USP39-220ENST00000613444 COL16A1Q07092 1604 aaPredicted RBP18.77■□□□□ 0.59
USP39-220ENST00000613444 ZBTB7CA1YPR0 619 aa18.76■□□□□ 0.59
USP39-220ENST00000613444 LTV1Q96GA3 475 aaPredicted RBP18.76■□□□□ 0.59
USP39-220ENST00000613444 COL22A1Q8NFW1 1626 aaPredicted RBP18.76■□□□□ 0.59
USP39-220ENST00000613444 PHLPP1O60346 1717 aa18.76■□□□□ 0.59
USP39-220ENST00000613444 TOM1O60784 492 aa18.76■□□□□ 0.59
USP39-220ENST00000613444 SLFN5Q08AF3 891 aa18.76■□□□□ 0.59
USP39-220ENST00000613444 NCAPD2Q15021 1401 aa18.75■□□□□ 0.59
USP39-220ENST00000613444 KIAA0232Q92628 1395 aa18.75■□□□□ 0.59
USP39-220ENST00000613444 NFE2L2Q16236 605 aa18.75■□□□□ 0.59
USP39-220ENST00000613444 DUSP27Q5VZP5 1158 aa18.75■□□□□ 0.59
USP39-220ENST00000613444 LMO7Q8WWI1 1683 aa18.75■□□□□ 0.59
USP39-220ENST00000613444 RIPK4P57078 832 aa18.74■□□□□ 0.59
USP39-220ENST00000613444 NBPF6Q5VWK0 638 aa18.74■□□□□ 0.59
USP39-220ENST00000613444 WDR63Q8IWG1 891 aa18.74■□□□□ 0.59
USP39-220ENST00000613444 LRRC59Q96AG4 307 aaKnown RBP18.74■□□□□ 0.59
USP39-220ENST00000613444 NBPF4Q96M43 638 aa18.74■□□□□ 0.59
USP39-220ENST00000613444 NEFMP07197 916 aa18.72■□□□□ 0.59
USP39-220ENST00000613444 ANKRD24Q8TF21 1146 aa18.72■□□□□ 0.59
USP39-220ENST00000613444 ERBB3P21860 1342 aa18.72■□□□□ 0.59
USP39-220ENST00000613444 GTF3C3Q9Y5Q9 886 aa18.72■□□□□ 0.59
USP39-220ENST00000613444 E9PSI1 815 aa18.71■□□□□ 0.59
USP39-220ENST00000613444 CHRNA2Q15822 529 aa18.71■□□□□ 0.59
USP39-220ENST00000613444 SUPT16HQ9Y5B9 1047 aaKnown RBP18.71■□□□□ 0.59
USP39-220ENST00000613444 FAM208AQ9UK61 1670 aaKnown RBP18.71■□□□□ 0.58
USP39-220ENST00000613444 USHBP1Q8N6Y0 703 aa18.7■□□□□ 0.58
USP39-220ENST00000613444 UBAP1LF5GYI3 381 aa18.69■□□□□ 0.58
USP39-220ENST00000613444 PIP4K2BP78356 416 aa18.69■□□□□ 0.58
USP39-220ENST00000613444 CERKQ8TCT0 537 aa18.69■□□□□ 0.58
USP39-220ENST00000613444 MTHFSDQ2M296 383 aaKnown RBP18.66■□□□□ 0.58
USP39-220ENST00000613444 PRDM11Q9NQV5 511 aa18.66■□□□□ 0.58
USP39-220ENST00000613444 IL16Q14005 1332 aa18.66■□□□□ 0.58
USP39-220ENST00000613444 RNF123Q5XPI4 1314 aa18.65■□□□□ 0.58
USP39-220ENST00000613444 HAP1P54257 671 aaPredicted RBP18.64■□□□□ 0.57
USP39-220ENST00000613444 COL5A2P05997 1499 aaPredicted RBP18.64■□□□□ 0.57
USP39-220ENST00000613444 FAM83GA6ND36 823 aa18.64■□□□□ 0.57
USP39-220ENST00000613444 RCAN3Q9UKA8 241 aa18.64■□□□□ 0.57
USP39-220ENST00000613444 LMOD3Q0VAK6 560 aa18.63■□□□□ 0.57
USP39-220ENST00000613444 THUMPD2Q9BTF0 503 aaKnown RBP18.63■□□□□ 0.57
USP39-220ENST00000613444 GAS2L2Q8NHY3 880 aa18.62■□□□□ 0.57
USP39-220ENST00000613444 COL14A1Q05707 1796 aaKnown RBP18.62■□□□□ 0.57
USP39-220ENST00000613444 DCTN1Q14203 1278 aa18.61■□□□□ 0.57
USP39-220ENST00000613444 MYH16Q9H6N6 1097 aa18.61■□□□□ 0.57
USP39-220ENST00000613444 FANCIQ9NVI1 1328 aa18.6■□□□□ 0.57
USP39-220ENST00000613444 LRRC37A3O60309 1634 aa18.6■□□□□ 0.57
USP39-220ENST00000613444 WDR17Q8IZU2 1322 aa18.6■□□□□ 0.57
USP39-220ENST00000613444 ZNF853P0CG23 659 aa18.59■□□□□ 0.57
USP39-220ENST00000613444 NLRP2Q9NX02 1062 aa18.59■□□□□ 0.57
USP39-220ENST00000613444 VIRMAQ69YN4 1812 aaKnown RBP18.59■□□□□ 0.57
USP39-220ENST00000613444 TSR2Q969E8 191 aaKnown RBP18.59■□□□□ 0.57
USP39-220ENST00000613444 CSB-PGBD3P0DP91 1061 aa18.58■□□□□ 0.56
USP39-220ENST00000613444 CALD1Q05682 793 aaKnown RBP18.58■□□□□ 0.56
USP39-220ENST00000613444 MCM10Q7L590 875 aa18.58■□□□□ 0.56
USP39-220ENST00000613444 MEGF6O75095 1541 aa18.58■□□□□ 0.56
USP39-220ENST00000613444 CRB1P82279 1406 aa18.57■□□□□ 0.56
USP39-220ENST00000613444 HTATSF1O43719 755 aaKnown RBP18.57■□□□□ 0.56
USP39-220ENST00000613444 IFT57Q9NWB7 429 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms