RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CNKSR2Q8WXI2 1034 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 MYBBP1AQ9BQG0 1328 aaKnown RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 SPATA24Q86W54 205 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 SPATS2LQ9NUQ6 558 aaKnown RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 HSPA4P34932 840 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 FMNL2Q96PY5 1086 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 CEP135Q66GS9 1140 aa5.84□□□□□ -1.47
VPS13D-213ENST00000613099 RBM33Q96EV2 1170 aaKnown RBP5.84□□□□□ -1.47
VPS13D-213ENST00000613099 CRACR2AQ9BSW2 395 aa5.84□□□□□ -1.48
VPS13D-213ENST00000613099 KRBA2Q6ZNG9 492 aa5.84□□□□□ -1.48
VPS13D-213ENST00000613099 PDCP20941 246 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 TCHPQ9BT92 498 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 NKTRP30414 1462 aaKnown RBP5.83□□□□□ -1.48
VPS13D-213ENST00000613099 SKIDA1Q1XH10 827 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 CEP112Q8N8E3 955 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 RPUSD2Q8IZ73 545 aaKnown RBP5.83□□□□□ -1.48
VPS13D-213ENST00000613099 FAM210AQ96ND0 272 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 CCDC183Q5T5S1 534 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 CCDC171Q6TFL3 1326 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 CERS3Q8IU89 383 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 GORABQ5T7V8 394 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 PANK2Q9BZ23 570 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 ANAPC15P60006 121 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 CAPN2P17655 700 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 FSD2A1L4K1 749 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 VEZTQ9HBM0 779 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 KIF15Q9NS87 1388 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 ZSCAN12O43309 604 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 RNF187Q5TA31 235 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-213ENST00000613099 WDR62O43379 1518 aa5.83□□□□□ -1.48
VPS13D-213ENST00000613099 K7ELQ4 463 aaPredicted RBP5.83□□□□□ -1.48
VPS13D-213ENST00000613099 IFT140Q96RY7 1462 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 CEP57Q86XR8 500 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 FAM114A1Q8IWE2 563 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 CCDC97Q96F63 343 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-213ENST00000613099 MYO5CQ9NQX4 1742 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 TTC36A6NLP5 189 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 SF3A1Q15459 793 aaKnown RBP5.82□□□□□ -1.48
VPS13D-213ENST00000613099 OTUD6BQ8N6M0 293 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 ADCY5O95622 1261 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 CLUAP1Q96AJ1 413 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 GSDMDP57764 484 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 PDE3AQ14432 1141 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 H3BQV1 296 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 IFFO2Q5TF58 517 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 MTUS2Q5JR59 1369 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 TXLNAP40222 546 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 HDAC1Q13547 482 aaPredicted RBP5.82□□□□□ -1.48
VPS13D-213ENST00000613099 SYNJ1O43426 1573 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 NT5C2P49902 561 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 FBLN2P98095 1184 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 SYCE3A1L190 88 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 RGS22Q8NE09 1264 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 TNPO1Q92973 898 aaKnown RBP5.82□□□□□ -1.48
VPS13D-213ENST00000613099 TBC1D2Q9BYX2 928 aa5.82□□□□□ -1.48
VPS13D-213ENST00000613099 WDR33Q9C0J8 1336 aaKnown RBP5.81□□□□□ -1.48
VPS13D-213ENST00000613099 SMARCC1Q92922 1105 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-213ENST00000613099 HECW1Q76N89 1606 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 GOLGA5Q8TBA6 731 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 RLBP1P12271 317 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 CCDC83Q8IWF9 413 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 DHX57Q6P158 1386 aaKnown RBP5.81□□□□□ -1.48
VPS13D-213ENST00000613099 GCC2Q8IWJ2 1684 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 MCTP2Q6DN12 878 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 CCDC73Q6ZRK6 1079 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 MICALL1Q8N3F8 863 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 CFTRP13569 1480 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 IRX5P78411 483 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-213ENST00000613099 ZKSCAN2Q63HK3 967 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 WDR63Q8IWG1 891 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 INTS3Q68E01 1043 aaKnown RBP5.81□□□□□ -1.48
VPS13D-213ENST00000613099 NBPF3Q9H094 633 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 NBPF8Q3BBV2 869 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 ANKRD18BA2A2Z9 1011 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 NEUROD2Q15784 382 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 CBFA2T2O43439 604 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 ARHGAP25P42331 645 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 CDC45O75419 566 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 ERLIN2O94905 339 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 SEPT6Q14141 434 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 HFM1A2PYH4 1435 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 MAP2K1Q02750 393 aaPredicted RBP5.81□□□□□ -1.48
VPS13D-213ENST00000613099 KIF5BP33176 963 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 GCKP35557 465 aa5.81□□□□□ -1.48
VPS13D-213ENST00000613099 ZSCAN26Q16670 478 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 SFPQP23246 707 aaKnown RBP eCLIP5.8□□□□□ -1.48
VPS13D-213ENST00000613099 SLC20A2Q08357 652 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 GPATCH3Q96I76 525 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 ZSCAN23Q3MJ62 389 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 OLFM4Q6UX06 510 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 KIF3BO15066 747 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 IRX1P78414 480 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-213ENST00000613099 ANKRD45Q5TZF3 282 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 DZIP1Q86YF9 867 aaKnown RBP5.8□□□□□ -1.48
VPS13D-213ENST00000613099 CLASRPQ8N2M8 674 aaKnown RBP5.8□□□□□ -1.48
VPS13D-213ENST00000613099 RTF1Q92541 710 aaKnown RBP5.8□□□□□ -1.48
VPS13D-213ENST00000613099 IGSF3O75054 1194 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 CTCFLQ8NI51 663 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-213ENST00000613099 SDF4Q9BRK5 362 aa5.8□□□□□ -1.48
VPS13D-213ENST00000613099 SMC3Q9UQE7 1217 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms