RNA–Protein interactions for RNA: ENST00000612404.4

SREK1-216, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, humanhuman

TSL 1 (best) BASIC

Gene SREK1, Length 2,128 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREK1-216ENST00000612404 ARHGEF25Q86VW2 580 aa23.33■■□□□ 1.32
SREK1-216ENST00000612404 RTL1A6NKG5 1358 aa23.32■■□□□ 1.32
SREK1-216ENST00000612404 EIF4A2Q14240 407 aaKnown RBP23.32■■□□□ 1.32
SREK1-216ENST00000612404 CCDC146Q8IYE0 955 aa23.32■■□□□ 1.32
SREK1-216ENST00000612404 BLMP54132 1417 aaPredicted RBP23.32■■□□□ 1.32
SREK1-216ENST00000612404 CRYBG1Q9Y4K1 1723 aa23.32■■□□□ 1.32
SREK1-216ENST00000612404 IP6K1Q92551 441 aa23.3■■□□□ 1.32
SREK1-216ENST00000612404 COL16A1Q07092 1604 aaPredicted RBP23.28■■□□□ 1.32
SREK1-216ENST00000612404 LTV1Q96GA3 475 aaPredicted RBP23.28■■□□□ 1.32
SREK1-216ENST00000612404 KIAA0232Q92628 1395 aa23.26■■□□□ 1.31
SREK1-216ENST00000612404 HMOX1P09601 288 aa23.26■■□□□ 1.31
SREK1-216ENST00000612404 SALL2Q9Y467 1007 aaPredicted RBP23.26■■□□□ 1.31
SREK1-216ENST00000612404 ABCA3Q99758 1704 aa23.25■■□□□ 1.31
SREK1-216ENST00000612404 RUNDC1Q96C34 613 aa23.24■■□□□ 1.31
SREK1-216ENST00000612404 CHRNA2Q15822 529 aa23.24■■□□□ 1.31
SREK1-216ENST00000612404 CPDO75976 1380 aa23.23■■□□□ 1.31
SREK1-216ENST00000612404 CENPBP07199 599 aaPredicted RBP23.23■■□□□ 1.31
SREK1-216ENST00000612404 AXIN2Q9Y2T1 843 aa23.23■■□□□ 1.31
SREK1-216ENST00000612404 FCHSD2O94868 740 aa23.23■■□□□ 1.31
SREK1-216ENST00000612404 PRDM11Q9NQV5 511 aa23.23■■□□□ 1.31
SREK1-216ENST00000612404 ZBED9Q6R2W3 1325 aa23.22■■□□□ 1.31
SREK1-216ENST00000612404 APAF1O14727 1248 aa23.22■■□□□ 1.31
SREK1-216ENST00000612404 PNNQ9H307 717 aaKnown RBP23.22■■□□□ 1.31
SREK1-216ENST00000612404 SULT6B1Q6IMI4 303 aa23.21■■□□□ 1.31
SREK1-216ENST00000612404 RSPH6AQ9H0K4 717 aa23.21■■□□□ 1.31
SREK1-216ENST00000612404 COL22A1Q8NFW1 1626 aaPredicted RBP23.21■■□□□ 1.31
SREK1-216ENST00000612404 EYA1Q99502 592 aa23.21■■□□□ 1.31
SREK1-216ENST00000612404 PRKAR2BP31323 418 aa23.2■■□□□ 1.3
SREK1-216ENST00000612404 ANKRD24Q8TF21 1146 aa23.2■■□□□ 1.3
SREK1-216ENST00000612404 MAPK8IP3Q9UPT6 1336 aa23.2■■□□□ 1.3
SREK1-216ENST00000612404 AEBP1Q8IUX7 1158 aa23.2■■□□□ 1.3
SREK1-216ENST00000612404 RGPD5Q99666 1765 aa23.2■■□□□ 1.3
SREK1-216ENST00000612404 RGPD1P0DJD0 1748 aa23.19■■□□□ 1.3
SREK1-216ENST00000612404 PLEKHF1Q96S99 279 aa23.19■■□□□ 1.3
SREK1-216ENST00000612404 NEFMP07197 916 aa23.18■■□□□ 1.3
SREK1-216ENST00000612404 TCP11L2Q8N4U5 519 aa23.18■■□□□ 1.3
SREK1-216ENST00000612404 IGSF1Q8N6C5 1336 aa23.18■■□□□ 1.3
SREK1-216ENST00000612404 COL18A1P39060 1754 aa23.17■■□□□ 1.3
SREK1-216ENST00000612404 NEUROD2Q15784 382 aa23.16■■□□□ 1.3
SREK1-216ENST00000612404 ABCC6O95255 1503 aa23.16■■□□□ 1.3
SREK1-216ENST00000612404 RRP7AQ9Y3A4 280 aaKnown RBP23.15■■□□□ 1.3
SREK1-216ENST00000612404 ERBB3P21860 1342 aa23.15■■□□□ 1.3
SREK1-216ENST00000612404 USHBP1Q8N6Y0 703 aa23.15■■□□□ 1.3
SREK1-216ENST00000612404 NBPF6Q5VWK0 638 aa23.14■■□□□ 1.3
SREK1-216ENST00000612404 NBPF4Q96M43 638 aa23.14■■□□□ 1.3
SREK1-216ENST00000612404 FAM83GA6ND36 823 aa23.14■■□□□ 1.29
SREK1-216ENST00000612404 NUTM2BA6NNL0 878 aaPredicted RBP23.14■■□□□ 1.29
SREK1-216ENST00000612404 NUTM2EB1AL46 878 aaPredicted RBP23.14■■□□□ 1.29
SREK1-216ENST00000612404 NUTM2AQ8IVF1 878 aaPredicted RBP23.14■■□□□ 1.29
SREK1-216ENST00000612404 CSB-PGBD3P0DP91 1061 aa23.13■■□□□ 1.29
SREK1-216ENST00000612404 RGPD2P0DJD1 1756 aa23.13■■□□□ 1.29
SREK1-216ENST00000612404 HSPA1LP34931 641 aa23.12■■□□□ 1.29
SREK1-216ENST00000612404 PHACTR3Q96KR7 559 aa23.12■■□□□ 1.29
SREK1-216ENST00000612404 JCADQ9P266 1359 aa23.12■■□□□ 1.29
SREK1-216ENST00000612404 KDRP35968 1356 aa23.12■■□□□ 1.29
SREK1-216ENST00000612404 ADAMTS2O95450 1211 aa23.11■■□□□ 1.29
SREK1-216ENST00000612404 LMO7Q8WWI1 1683 aa23.1■■□□□ 1.29
SREK1-216ENST00000612404 CAMTA1Q9Y6Y1 1673 aa23.1■■□□□ 1.29
SREK1-216ENST00000612404 NLRP2Q9NX02 1062 aa23.1■■□□□ 1.29
SREK1-216ENST00000612404 TMPOP42166 694 aaKnown RBP23.09■■□□□ 1.29
SREK1-216ENST00000612404 NGEFQ8N5V2 710 aa23.09■■□□□ 1.29
SREK1-216ENST00000612404 STRN4Q9NRL3 753 aa23.07■■□□□ 1.28
SREK1-216ENST00000612404 COL5A2P05997 1499 aaPredicted RBP23.06■■□□□ 1.28
SREK1-216ENST00000612404 RIPK4P57078 832 aa23.06■■□□□ 1.28
SREK1-216ENST00000612404 EVA1CP58658 441 aa23.06■■□□□ 1.28
SREK1-216ENST00000612404 BTG4Q9NY30 223 aa23.06■■□□□ 1.28
SREK1-216ENST00000612404 COL14A1Q05707 1796 aaKnown RBP23.06■■□□□ 1.28
SREK1-216ENST00000612404 NFE2L2Q16236 605 aa23.06■■□□□ 1.28
SREK1-216ENST00000612404 WDR17Q8IZU2 1322 aa23.05■■□□□ 1.28
SREK1-216ENST00000612404 WWC1Q8IX03 1113 aa23.05■■□□□ 1.28
SREK1-216ENST00000612404 FAM208AQ9UK61 1670 aaKnown RBP23.05■■□□□ 1.28
SREK1-216ENST00000612404 TOM1L2Q6ZVM7 507 aa23.03■■□□□ 1.28
SREK1-216ENST00000612404 ZNF521Q96K83 1311 aa23.03■■□□□ 1.28
SREK1-216ENST00000612404 NCAPD2Q15021 1401 aa23.03■■□□□ 1.28
SREK1-216ENST00000612404 PDE3BQ13370 1112 aa23.02■■□□□ 1.28
SREK1-216ENST00000612404 CCDC27Q2M243 656 aa23.02■■□□□ 1.28
SREK1-216ENST00000612404 NCBP3Q53F19 620 aaKnown RBP23.02■■□□□ 1.28
SREK1-216ENST00000612404 SPATA31A6Q5VVP1 1343 aa23.01■■□□□ 1.27
SREK1-216ENST00000612404 CDCA7LQ96GN5 454 aa23.01■■□□□ 1.27
SREK1-216ENST00000612404 GOLGA2Q08379 1002 aa23■■□□□ 1.27
SREK1-216ENST00000612404 MTHFSDQ2M296 383 aaKnown RBP23■■□□□ 1.27
SREK1-216ENST00000612404 LARP1Q6PKG0 1096 aaKnown RBP23■■□□□ 1.27
SREK1-216ENST00000612404 PHF23Q9BUL5 403 aaPredicted RBP23■■□□□ 1.27
SREK1-216ENST00000612404 TRIM35Q9UPQ4 493 aa23■■□□□ 1.27
SREK1-216ENST00000612404 PLCH1Q4KWH8 1693 aa22.99■■□□□ 1.27
SREK1-216ENST00000612404 GAS2L2Q8NHY3 880 aa22.99■■□□□ 1.27
SREK1-216ENST00000612404 RAPGEF4Q8WZA2 1011 aa22.99■■□□□ 1.27
SREK1-216ENST00000612404 DLG5Q8TDM6 1919 aa22.98■■□□□ 1.27
SREK1-216ENST00000612404 CARD10Q9BWT7 1032 aa22.97■■□□□ 1.27
SREK1-216ENST00000612404 LMOD3Q0VAK6 560 aa22.96■■□□□ 1.27
SREK1-216ENST00000612404 C8orf37Q96NL8 207 aa22.96■■□□□ 1.27
SREK1-216ENST00000612404 WDR63Q8IWG1 891 aa22.96■■□□□ 1.27
SREK1-216ENST00000612404 TATP17735 454 aaPredicted RBP22.95■■□□□ 1.26
SREK1-216ENST00000612404 CRB1P82279 1406 aa22.95■■□□□ 1.26
SREK1-216ENST00000612404 PLEKHO1Q53GL0 409 aaPredicted RBP22.95■■□□□ 1.26
SREK1-216ENST00000612404 USP35Q9P2H5 1018 aa22.95■■□□□ 1.26
SREK1-216ENST00000612404 NGLY1Q96IV0 654 aa22.94■■□□□ 1.26
SREK1-216ENST00000612404 LRP6O75581 1613 aa22.94■■□□□ 1.26
SREK1-216ENST00000612404 AMOTQ4VCS5 1084 aa22.94■■□□□ 1.26
SREK1-216ENST00000612404 MEX3CQ5U5Q3 659 aaKnown RBP22.93■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms