RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 COL18A1P39060 1754 aa19.31■□□□□ 0.68
UPF1-211ENST00000600868 ZBTB7CA1YPR0 619 aa19.3■□□□□ 0.68
UPF1-211ENST00000600868 BLMP54132 1417 aaPredicted RBP19.29■□□□□ 0.68
UPF1-211ENST00000600868 FAM83GA6ND36 823 aa19.29■□□□□ 0.68
UPF1-211ENST00000600868 ADAMTS2O95450 1211 aa19.29■□□□□ 0.68
UPF1-211ENST00000600868 CHRNA2Q15822 529 aa19.29■□□□□ 0.68
UPF1-211ENST00000600868 HSP90AB2PQ58FF8 381 aa19.29■□□□□ 0.68
UPF1-211ENST00000600868 COL14A1Q05707 1796 aaKnown RBP19.29■□□□□ 0.68
UPF1-211ENST00000600868 LRP6O75581 1613 aa19.29■□□□□ 0.68
UPF1-211ENST00000600868 COL3A1P02461 1466 aaPredicted RBP19.28■□□□□ 0.68
UPF1-211ENST00000600868 LMO7Q8WWI1 1683 aa19.28■□□□□ 0.68
UPF1-211ENST00000600868 CCDC184Q52MB2 194 aa19.28■□□□□ 0.68
UPF1-211ENST00000600868 MRS2Q9HD23 443 aa19.27■□□□□ 0.68
UPF1-211ENST00000600868 AXIN2Q9Y2T1 843 aa19.27■□□□□ 0.68
UPF1-211ENST00000600868 CAMTA1Q9Y6Y1 1673 aa19.25■□□□□ 0.67
UPF1-211ENST00000600868 DIAPH1O60610 1272 aaKnown RBP19.25■□□□□ 0.67
UPF1-211ENST00000600868 IL13P35225 146 aa19.24■□□□□ 0.67
UPF1-211ENST00000600868 EIF4A2Q14240 407 aaKnown RBP19.24■□□□□ 0.67
UPF1-211ENST00000600868 RGPD5Q99666 1765 aa19.24■□□□□ 0.67
UPF1-211ENST00000600868 ANKRD24Q8TF21 1146 aa19.22■□□□□ 0.67
UPF1-211ENST00000600868 BTG4Q9NY30 223 aa19.22■□□□□ 0.67
UPF1-211ENST00000600868 NUDCQ9Y266 331 aa19.22■□□□□ 0.67
UPF1-211ENST00000600868 ERBB3P21860 1342 aa19.22■□□□□ 0.67
UPF1-211ENST00000600868 COL5A2P05997 1499 aaPredicted RBP19.22■□□□□ 0.67
UPF1-211ENST00000600868 SLIT2O94813 1529 aa19.21■□□□□ 0.67
UPF1-211ENST00000600868 PLCH1Q4KWH8 1693 aa19.21■□□□□ 0.67
UPF1-211ENST00000600868 MEX3CQ5U5Q3 659 aaKnown RBP19.21■□□□□ 0.67
UPF1-211ENST00000600868 C8orf37Q96NL8 207 aa19.21■□□□□ 0.67
UPF1-211ENST00000600868 NWD2Q9ULI1 1742 aa19.21■□□□□ 0.67
UPF1-211ENST00000600868 FNBP4Q8N3X1 1017 aaPredicted RBP19.2■□□□□ 0.66
UPF1-211ENST00000600868 PNISRQ8TF01 805 aaKnown RBP19.2■□□□□ 0.66
UPF1-211ENST00000600868 LTV1Q96GA3 475 aaPredicted RBP19.2■□□□□ 0.66
UPF1-211ENST00000600868 NGLY1Q96IV0 654 aa19.2■□□□□ 0.66
UPF1-211ENST00000600868 FAM208AQ9UK61 1670 aaKnown RBP19.18■□□□□ 0.66
UPF1-211ENST00000600868 EVA1CP58658 441 aa19.18■□□□□ 0.66
UPF1-211ENST00000600868 ILDR1Q86SU0 546 aaPredicted RBP19.18■□□□□ 0.66
UPF1-211ENST00000600868 WDR17Q8IZU2 1322 aa19.18■□□□□ 0.66
UPF1-211ENST00000600868 RGPD1P0DJD0 1748 aa19.17■□□□□ 0.66
UPF1-211ENST00000600868 NRAPQ86VF7 1730 aa19.17■□□□□ 0.66
UPF1-211ENST00000600868 U2SURPO15042 1029 aaKnown RBP19.16■□□□□ 0.66
UPF1-211ENST00000600868 CSB-PGBD3P0DP91 1061 aa19.16■□□□□ 0.66
UPF1-211ENST00000600868 WDR43Q15061 677 aaKnown RBP eCLIP19.16■□□□□ 0.66
UPF1-211ENST00000600868 EYA1Q99502 592 aa19.16■□□□□ 0.66
UPF1-211ENST00000600868 IGSF1Q8N6C5 1336 aa19.16■□□□□ 0.66
UPF1-211ENST00000600868 BCL9LQ86UU0 1499 aa19.16■□□□□ 0.66
UPF1-211ENST00000600868 NBPF6Q5VWK0 638 aa19.15■□□□□ 0.66
UPF1-211ENST00000600868 UNC5CLQ8IV45 518 aa19.15■□□□□ 0.66
UPF1-211ENST00000600868 NBPF4Q96M43 638 aa19.15■□□□□ 0.66
UPF1-211ENST00000600868 STRN4Q9NRL3 753 aa19.15■□□□□ 0.66
UPF1-211ENST00000600868 U2AF1L5P0DN76 240 aaPredicted RBP19.14■□□□□ 0.65
UPF1-211ENST00000600868 U2AF1Q01081 240 aaKnown RBP eCLIP19.14■□□□□ 0.65
UPF1-211ENST00000600868 LARP1Q6PKG0 1096 aaKnown RBP19.14■□□□□ 0.65
UPF1-211ENST00000600868 NCAPD2Q15021 1401 aa19.14■□□□□ 0.65
UPF1-211ENST00000600868 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.14■□□□□ 0.65
UPF1-211ENST00000600868 RGPD2P0DJD1 1756 aa19.14■□□□□ 0.65
UPF1-211ENST00000600868 TOM1L2Q6ZVM7 507 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 CARD10Q9BWT7 1032 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 NLRP2Q9NX02 1062 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 USP21Q9UK80 565 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 ADAMTS8Q9UP79 889 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 AFF2P51816 1311 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 KDRP35968 1356 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 CRB1P82279 1406 aa19.13■□□□□ 0.65
UPF1-211ENST00000600868 FCHSD2O94868 740 aa19.11■□□□□ 0.65
UPF1-211ENST00000600868 SULT6B1Q6IMI4 303 aa19.11■□□□□ 0.65
UPF1-211ENST00000600868 FAM9BQ8IZU0 186 aa19.11■□□□□ 0.65
UPF1-211ENST00000600868 VPS72Q15906 364 aa19.1■□□□□ 0.65
UPF1-211ENST00000600868 HMOX1P09601 288 aa19.09■□□□□ 0.65
UPF1-211ENST00000600868 AEBP1Q8IUX7 1158 aa19.09■□□□□ 0.65
UPF1-211ENST00000600868 RSPH6AQ9H0K4 717 aa19.09■□□□□ 0.65
UPF1-211ENST00000600868 PNNQ9H307 717 aaKnown RBP19.09■□□□□ 0.65
UPF1-211ENST00000600868 USHBP1Q8N6Y0 703 aa19.08■□□□□ 0.64
UPF1-211ENST00000600868 SPATA31A1Q5TZJ5 1347 aa19.07■□□□□ 0.64
UPF1-211ENST00000600868 SPATA31A5Q5VU36 1347 aa19.07■□□□□ 0.64
UPF1-211ENST00000600868 SPATA31A7Q8IWB4 1347 aa19.07■□□□□ 0.64
UPF1-211ENST00000600868 ATRNO75882 1429 aa19.07■□□□□ 0.64
UPF1-211ENST00000600868 ZNF772Q68DY9 489 aaPredicted RBP19.06■□□□□ 0.64
UPF1-211ENST00000600868 PLEKHF1Q96S99 279 aa19.06■□□□□ 0.64
UPF1-211ENST00000600868 TRPC5Q9UL62 973 aaPredicted RBP19.06■□□□□ 0.64
UPF1-211ENST00000600868 THRAP3Q9Y2W1 955 aaKnown RBP19.06■□□□□ 0.64
UPF1-211ENST00000600868 PLEKHG2Q9H7P9 1386 aa19.06■□□□□ 0.64
UPF1-211ENST00000600868 PRKAR2BP31323 418 aa19.05■□□□□ 0.64
UPF1-211ENST00000600868 TCP11L2Q8N4U5 519 aa19.05■□□□□ 0.64
UPF1-211ENST00000600868 RUNDC1Q96C34 613 aa19.04■□□□□ 0.64
UPF1-211ENST00000600868 USP35Q9P2H5 1018 aa19.04■□□□□ 0.64
UPF1-211ENST00000600868 CCDC9Q9Y3X0 531 aaKnown RBP19.04■□□□□ 0.64
UPF1-211ENST00000600868 BARGINQ6ZT62 677 aa19.03■□□□□ 0.64
UPF1-211ENST00000600868 RAPGEF4Q8WZA2 1011 aa19.03■□□□□ 0.64
UPF1-211ENST00000600868 QTRT2Q9H974 415 aaKnown RBP19.03■□□□□ 0.64
UPF1-211ENST00000600868 NEFMP07197 916 aa19.02■□□□□ 0.64
UPF1-211ENST00000600868 IL2RBP14784 551 aa19.02■□□□□ 0.64
UPF1-211ENST00000600868 CCDC146Q8IYE0 955 aa19.02■□□□□ 0.64
UPF1-211ENST00000600868 GJD4Q96KN9 370 aaPredicted RBP19.02■□□□□ 0.64
UPF1-211ENST00000600868 DISP2A7MBM2 1401 aa19.01■□□□□ 0.63
UPF1-211ENST00000600868 MEGF6O75095 1541 aa19.01■□□□□ 0.63
UPF1-211ENST00000600868 TATP17735 454 aaPredicted RBP19.01■□□□□ 0.63
UPF1-211ENST00000600868 CDCA7Q9BWT1 371 aaPredicted RBP19.01■□□□□ 0.63
UPF1-211ENST00000600868 PHACTR3Q96KR7 559 aa19■□□□□ 0.63
UPF1-211ENST00000600868 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19■□□□□ 0.63
UPF1-211ENST00000600868 WNK3Q9BYP7 1800 aa19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms