RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.27■■□□□ 1
SHKBP1-226ENST00000600791 WDR17Q8IZU2 1322 aa21.27■□□□□ 0.99
SHKBP1-226ENST00000600791 USP31Q70CQ4 1352 aa21.26■□□□□ 0.99
SHKBP1-226ENST00000600791 ABCC6O95255 1503 aa21.26■□□□□ 0.99
SHKBP1-226ENST00000600791 TOM1L2Q6ZVM7 507 aa21.26■□□□□ 0.99
SHKBP1-226ENST00000600791 SLC12A5Q9H2X9 1139 aa21.26■□□□□ 0.99
SHKBP1-226ENST00000600791 A0A1W2PP64 1363 aa21.25■□□□□ 0.99
SHKBP1-226ENST00000600791 EDC4Q6P2E9 1401 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-226ENST00000600791 HDGFL2Q7Z4V5 671 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-226ENST00000600791 TESK2Q96S53 571 aa21.25■□□□□ 0.99
SHKBP1-226ENST00000600791 ST20-MTHFSA0A0A6YYL1 179 aa21.24■□□□□ 0.99
SHKBP1-226ENST00000600791 NME9Q86XW9 330 aa21.24■□□□□ 0.99
SHKBP1-226ENST00000600791 PUS7Q96PZ0 661 aaKnown RBP21.24■□□□□ 0.99
SHKBP1-226ENST00000600791 PEAK1Q9H792 1746 aa21.24■□□□□ 0.99
SHKBP1-226ENST00000600791 PSDA5PKW4 1024 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-226ENST00000600791 EZH2Q15910 746 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-226ENST00000600791 LTN1O94822 1766 aa21.22■□□□□ 0.99
SHKBP1-226ENST00000600791 APBA3O96018 575 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 CAMKK2Q96RR4 588 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 TERF2IPQ9NYB0 399 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 LRP5O75197 1615 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 RREB1Q92766 1687 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 NINLQ9Y2I6 1382 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 OVOS2A0A0G2JMS6 1433 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 OVOS2A0A0J9YW53 1432 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 OVOS2Q6IE36 1432 aa21.21■□□□□ 0.99
SHKBP1-226ENST00000600791 PARD3Q8TEW0 1356 aa21.2■□□□□ 0.98
SHKBP1-226ENST00000600791 CSB-PGBD3P0DP91 1061 aa21.19■□□□□ 0.98
SHKBP1-226ENST00000600791 DDB1Q16531 1140 aa21.19■□□□□ 0.98
SHKBP1-226ENST00000600791 CARD10Q9BWT7 1032 aa21.19■□□□□ 0.98
SHKBP1-226ENST00000600791 USP47Q96K76 1375 aa21.18■□□□□ 0.98
SHKBP1-226ENST00000600791 CDCA7Q9BWT1 371 aaPredicted RBP21.17■□□□□ 0.98
SHKBP1-226ENST00000600791 NUP188Q5SRE5 1749 aa21.17■□□□□ 0.98
SHKBP1-226ENST00000600791 SBF2Q86WG5 1849 aa21.17■□□□□ 0.98
SHKBP1-226ENST00000600791 C11orf95C9JLR9 678 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-226ENST00000600791 CCDC7Q96M83 1385 aa21.15■□□□□ 0.98
SHKBP1-226ENST00000600791 SLC24A1O60721 1099 aa21.15■□□□□ 0.98
SHKBP1-226ENST00000600791 R3HDM1Q15032 1099 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-226ENST00000600791 ERBB3P21860 1342 aa21.14■□□□□ 0.97
SHKBP1-226ENST00000600791 RGPD3A6NKT7 1758 aaPredicted RBP21.13■□□□□ 0.97
SHKBP1-226ENST00000600791 RGPD4Q7Z3J3 1758 aa21.13■□□□□ 0.97
SHKBP1-226ENST00000600791 MARCH10Q8NA82 808 aaPredicted RBP21.12■□□□□ 0.97
SHKBP1-226ENST00000600791 BCL9O00512 1426 aa21.12■□□□□ 0.97
SHKBP1-226ENST00000600791 TNS2Q63HR2 1409 aa21.12■□□□□ 0.97
SHKBP1-226ENST00000600791 ANKRD36BQ8N2N9 1353 aa21.11■□□□□ 0.97
SHKBP1-226ENST00000600791 TMF1P82094 1093 aa21.1■□□□□ 0.97
SHKBP1-226ENST00000600791 CLSPNQ9HAW4 1339 aa21.08■□□□□ 0.97
SHKBP1-226ENST00000600791 ANKRD24Q8TF21 1146 aa21.08■□□□□ 0.97
SHKBP1-226ENST00000600791 NLRP2Q9NX02 1062 aa21.08■□□□□ 0.97
SHKBP1-226ENST00000600791 EXOC5O00471 708 aa21.07■□□□□ 0.96
SHKBP1-226ENST00000600791 PTF1AQ7RTS3 328 aa21.07■□□□□ 0.96
SHKBP1-226ENST00000600791 COG3Q96JB2 828 aa21.07■□□□□ 0.96
SHKBP1-226ENST00000600791 PCGF6Q9BYE7 350 aa21.07■□□□□ 0.96
SHKBP1-226ENST00000600791 BCL11BQ9C0K0 894 aaPredicted RBP21.07■□□□□ 0.96
SHKBP1-226ENST00000600791 TIMELESSQ9UNS1 1208 aa21.07■□□□□ 0.96
SHKBP1-226ENST00000600791 FAM208AQ9UK61 1670 aaKnown RBP21.06■□□□□ 0.96
SHKBP1-226ENST00000600791 IP6K1Q92551 441 aa21.05■□□□□ 0.96
SHKBP1-226ENST00000600791 PLSCR1O15162 318 aa21.04■□□□□ 0.96
SHKBP1-226ENST00000600791 MYOM1P52179 1685 aa21.04■□□□□ 0.96
SHKBP1-226ENST00000600791 MAP3K19Q56UN5 1328 aa21.04■□□□□ 0.96
SHKBP1-226ENST00000600791 IL2RBP14784 551 aa21.03■□□□□ 0.96
SHKBP1-226ENST00000600791 NBPF14Q5TI25 921 aa21.03■□□□□ 0.96
SHKBP1-226ENST00000600791 NHSQ6T4R5 1651 aa21.02■□□□□ 0.96
SHKBP1-226ENST00000600791 CDCA8Q53HL2 280 aa21.02■□□□□ 0.96
SHKBP1-226ENST00000600791 KIF20BQ96Q89 1820 aa21.01■□□□□ 0.95
SHKBP1-226ENST00000600791 FBLN1P23142 703 aa21.01■□□□□ 0.95
SHKBP1-226ENST00000600791 FYB1O15117 783 aa21■□□□□ 0.95
SHKBP1-226ENST00000600791 HOXC9P31274 260 aa21■□□□□ 0.95
SHKBP1-226ENST00000600791 LTV1Q96GA3 475 aaPredicted RBP21■□□□□ 0.95
SHKBP1-226ENST00000600791 GGNBP2Q9H3C7 697 aa20.99■□□□□ 0.95
SHKBP1-226ENST00000600791 RTL1A6NKG5 1358 aa20.98■□□□□ 0.95
SHKBP1-226ENST00000600791 RGPD2P0DJD1 1756 aa20.97■□□□□ 0.95
SHKBP1-226ENST00000600791 KCNQ2O43526 872 aa20.97■□□□□ 0.95
SHKBP1-226ENST00000600791 AMPHP49418 695 aa20.97■□□□□ 0.95
SHKBP1-226ENST00000600791 PROM2Q8N271 834 aa20.97■□□□□ 0.95
SHKBP1-226ENST00000600791 ANO8Q9HCE9 1232 aaPredicted RBP20.97■□□□□ 0.95
SHKBP1-226ENST00000600791 RRS1Q15050 365 aaKnown RBP20.96■□□□□ 0.95
SHKBP1-226ENST00000600791 ACSBG1Q96GR2 724 aa20.95■□□□□ 0.94
SHKBP1-226ENST00000600791 BTAF1O14981 1849 aa20.94■□□□□ 0.94
SHKBP1-226ENST00000600791 NSD3Q9BZ95 1437 aa20.94■□□□□ 0.94
SHKBP1-226ENST00000600791 CASZ1Q86V15 1759 aa20.93■□□□□ 0.94
SHKBP1-226ENST00000600791 TXNRD1Q16881 649 aa20.93■□□□□ 0.94
SHKBP1-226ENST00000600791 CARD14Q9BXL6 1004 aa20.93■□□□□ 0.94
SHKBP1-226ENST00000600791 MEGF6O75095 1541 aa20.92■□□□□ 0.94
SHKBP1-226ENST00000600791 SHANK3Q9BYB0 1731 aa20.92■□□□□ 0.94
SHKBP1-226ENST00000600791 KAT6BQ8WYB5 2073 aa20.9■□□□□ 0.94
SHKBP1-226ENST00000600791 SMG6Q86US8 1419 aaKnown RBP20.89■□□□□ 0.94
SHKBP1-226ENST00000600791 DDX54Q8TDD1 881 aaKnown RBP20.89■□□□□ 0.93
SHKBP1-226ENST00000600791 FLT4P35916 1363 aa20.88■□□□□ 0.93
SHKBP1-226ENST00000600791 DOT1LQ8TEK3 1739 aa20.88■□□□□ 0.93
SHKBP1-226ENST00000600791 NBPF6Q5VWK0 638 aa20.88■□□□□ 0.93
SHKBP1-226ENST00000600791 CCER1Q8TC90 406 aaPredicted RBP20.88■□□□□ 0.93
SHKBP1-226ENST00000600791 NBPF4Q96M43 638 aa20.88■□□□□ 0.93
SHKBP1-226ENST00000600791 SPON1Q9HCB6 807 aa20.88■□□□□ 0.93
SHKBP1-226ENST00000600791 PAPPAQ13219 1627 aa20.88■□□□□ 0.93
SHKBP1-226ENST00000600791 INSRP06213 1382 aa20.87■□□□□ 0.93
SHKBP1-226ENST00000600791 KIF24Q5T7B8 1368 aa20.87■□□□□ 0.93
SHKBP1-226ENST00000600791 ANKRD26Q9UPS8 1709 aa20.87■□□□□ 0.93
SHKBP1-226ENST00000600791 HSP90AB2PQ58FF8 381 aa20.86■□□□□ 0.93
SHKBP1-226ENST00000600791 USHBP1Q8N6Y0 703 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms