RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 WDR17Q8IZU2 1322 aa21.12■□□□□ 0.97
LIG1-215ENST00000597901 CCER1Q8TC90 406 aaPredicted RBP21.12■□□□□ 0.97
LIG1-215ENST00000597901 AKAP12Q02952 1782 aa21.12■□□□□ 0.97
LIG1-215ENST00000597901 EDC4Q6P2E9 1401 aaKnown RBP21.12■□□□□ 0.97
LIG1-215ENST00000597901 THSD7AQ9UPZ6 1657 aa21.12■□□□□ 0.97
LIG1-215ENST00000597901 EP400Q96L91 3159 aa21.11■□□□□ 0.97
LIG1-215ENST00000597901 CSB-PGBD3P0DP91 1061 aa21.11■□□□□ 0.97
LIG1-215ENST00000597901 NINLQ9Y2I6 1382 aa21.1■□□□□ 0.97
LIG1-215ENST00000597901 TRIM37O94972 964 aa21.1■□□□□ 0.97
LIG1-215ENST00000597901 EN1Q05925 392 aaPredicted RBP21.1■□□□□ 0.97
LIG1-215ENST00000597901 CARD10Q9BWT7 1032 aa21.09■□□□□ 0.97
LIG1-215ENST00000597901 CDCA8Q53HL2 280 aa21.08■□□□□ 0.97
LIG1-215ENST00000597901 DDB1Q16531 1140 aa21.06■□□□□ 0.96
LIG1-215ENST00000597901 CDCA7Q9BWT1 371 aaPredicted RBP21.06■□□□□ 0.96
LIG1-215ENST00000597901 COL18A1P39060 1754 aa21.05■□□□□ 0.96
LIG1-215ENST00000597901 NFAT5O94916 1531 aa21.05■□□□□ 0.96
LIG1-215ENST00000597901 MON2Q7Z3U7 1717 aa21.05■□□□□ 0.96
LIG1-215ENST00000597901 APBA3O96018 575 aa21.05■□□□□ 0.96
LIG1-215ENST00000597901 COG3Q96JB2 828 aa21.05■□□□□ 0.96
LIG1-215ENST00000597901 ANKRD36BQ8N2N9 1353 aa21.03■□□□□ 0.96
LIG1-215ENST00000597901 C11orf95C9JLR9 678 aaPredicted RBP21.03■□□□□ 0.96
LIG1-215ENST00000597901 EZH2Q15910 746 aaKnown RBP21.03■□□□□ 0.96
LIG1-215ENST00000597901 CAMKK2Q96RR4 588 aa21.03■□□□□ 0.96
LIG1-215ENST00000597901 FYB1O15117 783 aa21.02■□□□□ 0.96
LIG1-215ENST00000597901 FBLN1P23142 703 aa21.02■□□□□ 0.96
LIG1-215ENST00000597901 IP6K1Q92551 441 aa21.02■□□□□ 0.96
LIG1-215ENST00000597901 EXOC5O00471 708 aa21.01■□□□□ 0.95
LIG1-215ENST00000597901 ANKRD24Q8TF21 1146 aa21.01■□□□□ 0.95
LIG1-215ENST00000597901 NLRP2Q9NX02 1062 aa21.01■□□□□ 0.95
LIG1-215ENST00000597901 MARCH10Q8NA82 808 aaPredicted RBP21■□□□□ 0.95
LIG1-215ENST00000597901 OVOS2A0A0J9YW53 1432 aa21■□□□□ 0.95
LIG1-215ENST00000597901 OVOS2Q6IE36 1432 aa21■□□□□ 0.95
LIG1-215ENST00000597901 ERBB3P21860 1342 aa21■□□□□ 0.95
LIG1-215ENST00000597901 GGNBP2Q9H3C7 697 aa20.99■□□□□ 0.95
LIG1-215ENST00000597901 CCDC7Q96M83 1385 aa20.98■□□□□ 0.95
LIG1-215ENST00000597901 CARD14Q9BXL6 1004 aa20.98■□□□□ 0.95
LIG1-215ENST00000597901 DISP2A7MBM2 1401 aa20.97■□□□□ 0.95
LIG1-215ENST00000597901 RGPD1P0DJD0 1748 aa20.96■□□□□ 0.95
LIG1-215ENST00000597901 PSDA5PKW4 1024 aaPredicted RBP20.96■□□□□ 0.95
LIG1-215ENST00000597901 AMPHP49418 695 aa20.96■□□□□ 0.95
LIG1-215ENST00000597901 EIF4G2P78344 907 aaKnown RBP eCLIP20.96■□□□□ 0.95
LIG1-215ENST00000597901 MAP3K19Q56UN5 1328 aa20.96■□□□□ 0.95
LIG1-215ENST00000597901 LTV1Q96GA3 475 aaPredicted RBP20.95■□□□□ 0.94
LIG1-215ENST00000597901 ABCC6O95255 1503 aa20.94■□□□□ 0.94
LIG1-215ENST00000597901 HSPA5P11021 654 aaKnown RBP20.94■□□□□ 0.94
LIG1-215ENST00000597901 IL2RBP14784 551 aa20.94■□□□□ 0.94
LIG1-215ENST00000597901 HOXC9P31274 260 aa20.94■□□□□ 0.94
LIG1-215ENST00000597901 BCL11BQ9C0K0 894 aaPredicted RBP20.94■□□□□ 0.94
LIG1-215ENST00000597901 OVOS2A0A0G2JMS6 1433 aa20.94■□□□□ 0.94
LIG1-215ENST00000597901 USP54Q70EL1 1684 aa20.93■□□□□ 0.94
LIG1-215ENST00000597901 PTF1AQ7RTS3 328 aa20.93■□□□□ 0.94
LIG1-215ENST00000597901 PARP4Q9UKK3 1724 aaKnown RBP20.92■□□□□ 0.94
LIG1-215ENST00000597901 R3HDM1Q15032 1099 aaKnown RBP20.92■□□□□ 0.94
LIG1-215ENST00000597901 RRS1Q15050 365 aaKnown RBP20.92■□□□□ 0.94
LIG1-215ENST00000597901 POLR3GLQ9BT43 218 aa20.92■□□□□ 0.94
LIG1-215ENST00000597901 RGPD5Q99666 1765 aa20.92■□□□□ 0.94
LIG1-215ENST00000597901 PARD3Q8TEW0 1356 aa20.91■□□□□ 0.94
LIG1-215ENST00000597901 PLSCR1O15162 318 aa20.9■□□□□ 0.94
LIG1-215ENST00000597901 BCL9O00512 1426 aa20.88■□□□□ 0.93
LIG1-215ENST00000597901 NBPF14Q5TI25 921 aa20.87■□□□□ 0.93
LIG1-215ENST00000597901 TNS1Q9HBL0 1735 aaKnown RBP20.87■□□□□ 0.93
LIG1-215ENST00000597901 LRRC37A3O60309 1634 aa20.86■□□□□ 0.93
LIG1-215ENST00000597901 KCNQ2O43526 872 aa20.85■□□□□ 0.93
LIG1-215ENST00000597901 HSP90AB2PQ58FF8 381 aa20.85■□□□□ 0.93
LIG1-215ENST00000597901 NSD3Q9BZ95 1437 aa20.85■□□□□ 0.93
LIG1-215ENST00000597901 NBPF6Q5VWK0 638 aa20.84■□□□□ 0.93
LIG1-215ENST00000597901 PROM2Q8N271 834 aa20.84■□□□□ 0.93
LIG1-215ENST00000597901 NBPF4Q96M43 638 aa20.84■□□□□ 0.93
LIG1-215ENST00000597901 PEAK1Q9H792 1746 aa20.84■□□□□ 0.93
LIG1-215ENST00000597901 LTN1O94822 1766 aa20.83■□□□□ 0.93
LIG1-215ENST00000597901 DDX54Q8TDD1 881 aaKnown RBP20.83■□□□□ 0.93
LIG1-215ENST00000597901 ACSBG1Q96GR2 724 aa20.83■□□□□ 0.93
LIG1-215ENST00000597901 TNS2Q63HR2 1409 aa20.82■□□□□ 0.92
LIG1-215ENST00000597901 PANK3Q9H999 370 aa20.82■□□□□ 0.92
LIG1-215ENST00000597901 RTL1A6NKG5 1358 aa20.82■□□□□ 0.92
LIG1-215ENST00000597901 CGNL1Q0VF96 1302 aa20.81■□□□□ 0.92
LIG1-215ENST00000597901 LRP5O75197 1615 aa20.8■□□□□ 0.92
LIG1-215ENST00000597901 EMILIN1Q9Y6C2 1016 aa20.8■□□□□ 0.92
LIG1-215ENST00000597901 ZCRB1Q8TBF4 217 aaKnown RBP20.79■□□□□ 0.92
LIG1-215ENST00000597901 INSRP06213 1382 aa20.79■□□□□ 0.92
LIG1-215ENST00000597901 SRCAPQ6ZRS2 3230 aa20.79■□□□□ 0.92
LIG1-215ENST00000597901 KIF24Q5T7B8 1368 aa20.78■□□□□ 0.92
LIG1-215ENST00000597901 PPM1GO15355 546 aaPredicted RBP20.78■□□□□ 0.92
LIG1-215ENST00000597901 TXNRD1Q16881 649 aa20.78■□□□□ 0.92
LIG1-215ENST00000597901 USHBP1Q8N6Y0 703 aa20.78■□□□□ 0.92
LIG1-215ENST00000597901 FLT4P35916 1363 aa20.76■□□□□ 0.91
LIG1-215ENST00000597901 RAPGEF4Q8WZA2 1011 aa20.75■□□□□ 0.91
LIG1-215ENST00000597901 POLKQ9UBT6 870 aa20.75■□□□□ 0.91
LIG1-215ENST00000597901 WNK3Q9BYP7 1800 aa20.75■□□□□ 0.91
LIG1-215ENST00000597901 WASHC2AQ641Q2 1341 aa20.74■□□□□ 0.91
LIG1-215ENST00000597901 MYOM1P52179 1685 aa20.73■□□□□ 0.91
LIG1-215ENST00000597901 SMG6Q86US8 1419 aaKnown RBP20.73■□□□□ 0.91
LIG1-215ENST00000597901 TATP17735 454 aaPredicted RBP20.73■□□□□ 0.91
LIG1-215ENST00000597901 TNNT2P45379 298 aaPredicted RBP20.73■□□□□ 0.91
LIG1-215ENST00000597901 SBF2Q86WG5 1849 aa20.72■□□□□ 0.91
LIG1-215ENST00000597901 PRIM1P49642 420 aaKnown RBP20.72■□□□□ 0.91
LIG1-215ENST00000597901 ANO8Q9HCE9 1232 aaPredicted RBP20.72■□□□□ 0.91
LIG1-215ENST00000597901 MEGF6O75095 1541 aa20.69■□□□□ 0.9
LIG1-215ENST00000597901 SYTL4Q96C24 671 aaPredicted RBP20.69■□□□□ 0.9
LIG1-215ENST00000597901 STK32BQ9NY57 414 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms