RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SLIT3O75094 1523 aa14.77□□□□□ -0.04
TRIM28-210ENST00000597618 WDR17Q8IZU2 1322 aa14.77□□□□□ -0.04
TRIM28-210ENST00000597618 PTF1AQ7RTS3 328 aa14.77□□□□□ -0.05
TRIM28-210ENST00000597618 PROM2Q8N271 834 aa14.77□□□□□ -0.05
TRIM28-210ENST00000597618 STK32BQ9NY57 414 aa14.77□□□□□ -0.05
TRIM28-210ENST00000597618 USP6P35125 1406 aa14.76□□□□□ -0.05
TRIM28-210ENST00000597618 NLRP6P59044 892 aa14.76□□□□□ -0.05
TRIM28-210ENST00000597618 MARCH10Q8NA82 808 aaPredicted RBP14.76□□□□□ -0.05
TRIM28-210ENST00000597618 KIAA1210Q9ULL0 1709 aa14.75□□□□□ -0.05
TRIM28-210ENST00000597618 TXNRD1Q16881 649 aa14.75□□□□□ -0.05
TRIM28-210ENST00000597618 FHDC1Q9C0D6 1143 aaPredicted RBP14.75□□□□□ -0.05
TRIM28-210ENST00000597618 ATF5Q9Y2D1 282 aaPredicted RBP14.75□□□□□ -0.05
TRIM28-210ENST00000597618 SLC15A2Q16348 729 aa14.74□□□□□ -0.05
TRIM28-210ENST00000597618 SYT17Q9BSW7 474 aa14.74□□□□□ -0.05
TRIM28-210ENST00000597618 MTFR1LQ9H019 292 aa14.74□□□□□ -0.05
TRIM28-210ENST00000597618 CABP2Q9NPB3 220 aa14.74□□□□□ -0.05
TRIM28-210ENST00000597618 CPSF1Q10570 1443 aaKnown RBP14.74□□□□□ -0.05
TRIM28-210ENST00000597618 WNK3Q9BYP7 1800 aa14.73□□□□□ -0.05
TRIM28-210ENST00000597618 CENPJQ9HC77 1338 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-210ENST00000597618 SENP3-EIF4A1A0A087X0R7 540 aa14.72□□□□□ -0.05
TRIM28-210ENST00000597618 AXIN2Q9Y2T1 843 aa14.72□□□□□ -0.05
TRIM28-210ENST00000597618 AKAP12Q02952 1782 aa14.72□□□□□ -0.05
TRIM28-210ENST00000597618 COL18A1P39060 1754 aa14.71□□□□□ -0.05
TRIM28-210ENST00000597618 CSB-PGBD3P0DP91 1061 aa14.71□□□□□ -0.05
TRIM28-210ENST00000597618 SGIP1Q9BQI5 828 aa14.71□□□□□ -0.05
TRIM28-210ENST00000597618 CARD10Q9BWT7 1032 aa14.71□□□□□ -0.05
TRIM28-210ENST00000597618 CABP1Q9NZU7 370 aa14.71□□□□□ -0.05
TRIM28-210ENST00000597618 GOLGB1Q14789 3259 aaKnown RBP14.71□□□□□ -0.05
TRIM28-210ENST00000597618 C1QTNF8P60827 252 aa14.7□□□□□ -0.06
TRIM28-210ENST00000597618 NBPF1Q3BBV0 1214 aa14.7□□□□□ -0.06
TRIM28-210ENST00000597618 KCNH5Q8NCM2 988 aa14.7□□□□□ -0.06
TRIM28-210ENST00000597618 PIK3C2AO00443 1686 aa14.7□□□□□ -0.06
TRIM28-210ENST00000597618 MAP3K5Q99683 1374 aa14.7□□□□□ -0.06
TRIM28-210ENST00000597618 TNS2Q63HR2 1409 aa14.69□□□□□ -0.06
TRIM28-210ENST00000597618 QRICH2Q9H0J4 1663 aa14.69□□□□□ -0.06
TRIM28-210ENST00000597618 EXOC5O00471 708 aa14.69□□□□□ -0.06
TRIM28-210ENST00000597618 ARHGEF25Q86VW2 580 aa14.69□□□□□ -0.06
TRIM28-210ENST00000597618 CCDC7Q96M83 1385 aa14.69□□□□□ -0.06
TRIM28-210ENST00000597618 ARXQ96QS3 562 aa14.68□□□□□ -0.06
TRIM28-210ENST00000597618 ABCC6O95255 1503 aa14.67□□□□□ -0.06
TRIM28-210ENST00000597618 CEP350Q5VT06 3117 aa14.67□□□□□ -0.06
TRIM28-210ENST00000597618 TRPM1Q7Z4N2 1603 aa14.66□□□□□ -0.06
TRIM28-210ENST00000597618 NHSQ6T4R5 1651 aa14.66□□□□□ -0.06
TRIM28-210ENST00000597618 CHD4Q14839 1912 aa14.66□□□□□ -0.06
TRIM28-210ENST00000597618 SOX12O15370 315 aa14.65□□□□□ -0.06
TRIM28-210ENST00000597618 ZNF692Q9BU19 519 aaPredicted RBP14.65□□□□□ -0.06
TRIM28-210ENST00000597618 PAPPAQ13219 1627 aa14.65□□□□□ -0.06
TRIM28-210ENST00000597618 TTC21BQ7Z4L5 1316 aa14.65□□□□□ -0.06
TRIM28-210ENST00000597618 EVC2Q86UK5 1308 aa14.65□□□□□ -0.06
TRIM28-210ENST00000597618 TTC21AQ8NDW8 1320 aa14.65□□□□□ -0.06
TRIM28-210ENST00000597618 NFAT5O94916 1531 aa14.64□□□□□ -0.07
TRIM28-210ENST00000597618 GPR162Q16538 588 aa14.63□□□□□ -0.07
TRIM28-210ENST00000597618 GIGYF1O75420 1035 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-210ENST00000597618 ACSBG1Q96GR2 724 aa14.62□□□□□ -0.07
TRIM28-210ENST00000597618 ZNF827Q17R98 1081 aa14.61□□□□□ -0.07
TRIM28-210ENST00000597618 ERBB3P21860 1342 aa14.6□□□□□ -0.07
TRIM28-210ENST00000597618 RGPD5Q99666 1765 aa14.6□□□□□ -0.07
TRIM28-210ENST00000597618 IL2RBP14784 551 aa14.59□□□□□ -0.07
TRIM28-210ENST00000597618 POLD1P28340 1107 aa14.59□□□□□ -0.07
TRIM28-210ENST00000597618 IFFO2Q5TF58 517 aa14.59□□□□□ -0.07
TRIM28-210ENST00000597618 SLC16A10Q8TF71 515 aa14.59□□□□□ -0.07
TRIM28-210ENST00000597618 NLRP2Q9NX02 1062 aa14.59□□□□□ -0.07
TRIM28-210ENST00000597618 KTN1Q86UP2 1357 aaKnown RBP14.58□□□□□ -0.08
TRIM28-210ENST00000597618 SLC27A3Q5K4L6 730 aa14.57□□□□□ -0.08
TRIM28-210ENST00000597618 KLHL34Q8N239 644 aa14.57□□□□□ -0.08
TRIM28-210ENST00000597618 LRRC4BQ9NT99 713 aa14.57□□□□□ -0.08
TRIM28-210ENST00000597618 BTAF1O14981 1849 aa14.57□□□□□ -0.08
TRIM28-210ENST00000597618 PELP1Q8IZL8 1130 aaKnown RBP14.56□□□□□ -0.08
TRIM28-210ENST00000597618 AKT1S1Q96B36 256 aa14.56□□□□□ -0.08
TRIM28-210ENST00000597618 USP31Q70CQ4 1352 aa14.56□□□□□ -0.08
TRIM28-210ENST00000597618 PNPLA7Q6ZV29 1317 aa14.54□□□□□ -0.08
TRIM28-210ENST00000597618 QSER1Q2KHR3 1735 aa14.54□□□□□ -0.08
TRIM28-210ENST00000597618 USP54Q70EL1 1684 aa14.53□□□□□ -0.08
TRIM28-210ENST00000597618 ANKRD24Q8TF21 1146 aa14.53□□□□□ -0.08
TRIM28-210ENST00000597618 TFCP2L1Q9NZI6 479 aa14.53□□□□□ -0.08
TRIM28-210ENST00000597618 MON2Q7Z3U7 1717 aa14.52□□□□□ -0.08
TRIM28-210ENST00000597618 SHANK3Q9BYB0 1731 aa14.52□□□□□ -0.08
TRIM28-210ENST00000597618 ROCK2O75116 1388 aaKnown RBP14.52□□□□□ -0.08
TRIM28-210ENST00000597618 GRIN3BO60391 1043 aa14.52□□□□□ -0.09
TRIM28-210ENST00000597618 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.52□□□□□ -0.09
TRIM28-210ENST00000597618 COL24A1Q17RW2 1714 aa14.52□□□□□ -0.09
TRIM28-210ENST00000597618 NLGN2Q8NFZ4 835 aa14.51□□□□□ -0.09
TRIM28-210ENST00000597618 NME9Q86XW9 330 aa14.5□□□□□ -0.09
TRIM28-210ENST00000597618 L3MBTL2Q969R5 705 aa14.5□□□□□ -0.09
TRIM28-210ENST00000597618 SBNO2Q9Y2G9 1366 aa14.49□□□□□ -0.09
TRIM28-210ENST00000597618 DDX54Q8TDD1 881 aaKnown RBP14.49□□□□□ -0.09
TRIM28-210ENST00000597618 LTN1O94822 1766 aa14.49□□□□□ -0.09
TRIM28-210ENST00000597618 ANKRD36BQ8N2N9 1353 aa14.48□□□□□ -0.09
TRIM28-210ENST00000597618 SYTL4Q96C24 671 aaPredicted RBP14.48□□□□□ -0.09
TRIM28-210ENST00000597618 CD163L1Q9NR16 1453 aa14.47□□□□□ -0.09
TRIM28-210ENST00000597618 YBX3P16989 372 aaKnown RBP eCLIP14.47□□□□□ -0.092e-19■□□□□ 8.2
TRIM28-210ENST00000597618 EDC4Q6P2E9 1401 aaKnown RBP14.47□□□□□ -0.09
TRIM28-210ENST00000597618 ATP10DQ9P241 1426 aa14.47□□□□□ -0.09
TRIM28-210ENST00000597618 KAT6BQ8WYB5 2073 aa14.46□□□□□ -0.09
TRIM28-210ENST00000597618 PRIM1P49642 420 aaKnown RBP14.46□□□□□ -0.09
TRIM28-210ENST00000597618 KCNQ4P56696 695 aa14.46□□□□□ -0.09
TRIM28-210ENST00000597618 HDGFL2Q7Z4V5 671 aaPredicted RBP14.46□□□□□ -0.09
TRIM28-210ENST00000597618 NSD2O96028 1365 aa14.46□□□□□ -0.1
TRIM28-210ENST00000597618 FAM208AQ9UK61 1670 aaKnown RBP14.46□□□□□ -0.1
TRIM28-210ENST00000597618 TUBGCP6Q96RT7 1819 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms