RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 TNNT2P45379 298 aaPredicted RBP11.38□□□□□ -0.59
VRK3-211ENST00000596445 RRS1Q15050 365 aaKnown RBP11.38□□□□□ -0.59
VRK3-211ENST00000596445 RGS17Q9UGC6 210 aaPredicted RBP11.38□□□□□ -0.59
VRK3-211ENST00000596445 KIF24Q5T7B8 1368 aa11.38□□□□□ -0.59
VRK3-211ENST00000596445 AMPHP49418 695 aa11.37□□□□□ -0.59
VRK3-211ENST00000596445 IP6K1Q92551 441 aa11.37□□□□□ -0.59
VRK3-211ENST00000596445 AXIN2Q9Y2T1 843 aa11.37□□□□□ -0.59
VRK3-211ENST00000596445 RTL1A6NKG5 1358 aa11.37□□□□□ -0.59
VRK3-211ENST00000596445 PEAK1Q9H792 1746 aa11.36□□□□□ -0.59
VRK3-211ENST00000596445 EVA1CP58658 441 aa11.36□□□□□ -0.59
VRK3-211ENST00000596445 CNGB1Q14028 1251 aaPredicted RBP11.36□□□□□ -0.59
VRK3-211ENST00000596445 QTRT2Q9H974 415 aaKnown RBP11.36□□□□□ -0.59
VRK3-211ENST00000596445 POLKQ9UBT6 870 aa11.36□□□□□ -0.59
VRK3-211ENST00000596445 TRPC5Q9UL62 973 aaPredicted RBP11.36□□□□□ -0.59
VRK3-211ENST00000596445 COL5A2P05997 1499 aaPredicted RBP11.36□□□□□ -0.59
VRK3-211ENST00000596445 ATRNO75882 1429 aa11.35□□□□□ -0.59
VRK3-211ENST00000596445 BLMP54132 1417 aaPredicted RBP11.35□□□□□ -0.59
VRK3-211ENST00000596445 HOXC9P31274 260 aa11.35□□□□□ -0.59
VRK3-211ENST00000596445 VPS72Q15906 364 aa11.35□□□□□ -0.59
VRK3-211ENST00000596445 EMILIN1Q9Y6C2 1016 aa11.35□□□□□ -0.59
VRK3-211ENST00000596445 FLT4P35916 1363 aa11.35□□□□□ -0.59
VRK3-211ENST00000596445 SMG6Q86US8 1419 aaKnown RBP11.35□□□□□ -0.59
VRK3-211ENST00000596445 PPM1GO15355 546 aaPredicted RBP11.34□□□□□ -0.59
VRK3-211ENST00000596445 POTEAQ6S8J7 498 aa11.34□□□□□ -0.59
VRK3-211ENST00000596445 STRN4Q9NRL3 753 aa11.34□□□□□ -0.59
VRK3-211ENST00000596445 FAM208AQ9UK61 1670 aaKnown RBP11.33□□□□□ -0.6
VRK3-211ENST00000596445 INSRP06213 1382 aa11.33□□□□□ -0.6
VRK3-211ENST00000596445 PARD3Q8TEW0 1356 aa11.33□□□□□ -0.6
VRK3-211ENST00000596445 LARP1Q6PKG0 1096 aaKnown RBP11.33□□□□□ -0.6
VRK3-211ENST00000596445 ANKRD24Q8TF21 1146 aa11.33□□□□□ -0.6
VRK3-211ENST00000596445 ERBB3P21860 1342 aa11.33□□□□□ -0.6
VRK3-211ENST00000596445 WDR17Q8IZU2 1322 aa11.33□□□□□ -0.6
VRK3-211ENST00000596445 MTHFSP49914 203 aa11.32□□□□□ -0.6
VRK3-211ENST00000596445 RBM6P78332 1123 aaKnown RBP11.32□□□□□ -0.6
VRK3-211ENST00000596445 HSP90AB2PQ58FF8 381 aa11.32□□□□□ -0.6
VRK3-211ENST00000596445 GJD4Q96KN9 370 aaPredicted RBP11.32□□□□□ -0.6
VRK3-211ENST00000596445 CCDC9Q9Y3X0 531 aaKnown RBP11.32□□□□□ -0.6
VRK3-211ENST00000596445 CRB1P82279 1406 aa11.32□□□□□ -0.6
VRK3-211ENST00000596445 SPATA31A5Q5VU36 1347 aa11.32□□□□□ -0.6
VRK3-211ENST00000596445 SPATA31A7Q8IWB4 1347 aa11.32□□□□□ -0.6
VRK3-211ENST00000596445 CDK12Q9NYV4 1490 aaPredicted RBP11.32□□□□□ -0.6
VRK3-211ENST00000596445 CSB-PGBD3P0DP91 1061 aa11.31□□□□□ -0.6
VRK3-211ENST00000596445 RXRBP28702 533 aa11.31□□□□□ -0.6
VRK3-211ENST00000596445 RALBP1Q15311 655 aa11.31□□□□□ -0.6
VRK3-211ENST00000596445 TOM1L2Q6ZVM7 507 aa11.31□□□□□ -0.6
VRK3-211ENST00000596445 GLI3P10071 1580 aa11.31□□□□□ -0.6
VRK3-211ENST00000596445 SPATA31A1Q5TZJ5 1347 aa11.31□□□□□ -0.6
VRK3-211ENST00000596445 RGPD2P0DJD1 1756 aa11.31□□□□□ -0.6
VRK3-211ENST00000596445 PPP2R1AP30153 589 aa11.3□□□□□ -0.6
VRK3-211ENST00000596445 LTV1Q96GA3 475 aaPredicted RBP11.3□□□□□ -0.6
VRK3-211ENST00000596445 CARD10Q9BWT7 1032 aa11.3□□□□□ -0.6
VRK3-211ENST00000596445 TCP11L2Q8N4U5 519 aa11.29□□□□□ -0.6
VRK3-211ENST00000596445 PRKRIP1Q9H875 184 aaPredicted RBP11.29□□□□□ -0.6
VRK3-211ENST00000596445 NLRP2Q9NX02 1062 aa11.29□□□□□ -0.6
VRK3-211ENST00000596445 THRAP3Q9Y2W1 955 aaKnown RBP11.29□□□□□ -0.6
VRK3-211ENST00000596445 USP35Q9P2H5 1018 aa11.28□□□□□ -0.6
VRK3-211ENST00000596445 WNK3Q9BYP7 1800 aa11.28□□□□□ -0.6
VRK3-211ENST00000596445 ONECUT3O60422 494 aaPredicted RBP11.27□□□□□ -0.61
VRK3-211ENST00000596445 EIF4A2Q14240 407 aaKnown RBP11.27□□□□□ -0.61
VRK3-211ENST00000596445 FAM98CQ17RN3 349 aaKnown RBP11.27□□□□□ -0.61
VRK3-211ENST00000596445 BARGINQ6ZT62 677 aa11.27□□□□□ -0.61
VRK3-211ENST00000596445 MYBBP1AQ9BQG0 1328 aaKnown RBP11.27□□□□□ -0.61
VRK3-211ENST00000596445 EP400Q96L91 3159 aa11.26□□□□□ -0.61
VRK3-211ENST00000596445 NBPF6Q5VWK0 638 aa11.26□□□□□ -0.61
VRK3-211ENST00000596445 NBPF4Q96M43 638 aa11.26□□□□□ -0.61
VRK3-211ENST00000596445 CFAP53Q96M91 514 aa11.26□□□□□ -0.61
VRK3-211ENST00000596445 THSD7AQ9UPZ6 1657 aa11.26□□□□□ -0.61
VRK3-211ENST00000596445 COL3A1P02461 1466 aaPredicted RBP11.25□□□□□ -0.61
VRK3-211ENST00000596445 DIAPH1O60610 1272 aaKnown RBP11.25□□□□□ -0.61
VRK3-211ENST00000596445 IL13P35225 146 aa11.25□□□□□ -0.61
VRK3-211ENST00000596445 EYA1Q99502 592 aa11.25□□□□□ -0.61
VRK3-211ENST00000596445 CDCA7Q9BWT1 371 aaPredicted RBP11.25□□□□□ -0.61
VRK3-211ENST00000596445 RGS12O14924 1447 aa11.25□□□□□ -0.61
VRK3-211ENST00000596445 RGPD1P0DJD0 1748 aa11.24□□□□□ -0.61
VRK3-211ENST00000596445 PARP4Q9UKK3 1724 aaKnown RBP11.24□□□□□ -0.61
VRK3-211ENST00000596445 BRWD3Q6RI45 1802 aa11.24□□□□□ -0.61
VRK3-211ENST00000596445 ANP32CO43423 234 aa11.24□□□□□ -0.61
VRK3-211ENST00000596445 SEPT12Q8IYM1 358 aa11.24□□□□□ -0.61
VRK3-211ENST00000596445 IGSF1Q8N6C5 1336 aa11.24□□□□□ -0.61
VRK3-211ENST00000596445 DISP2A7MBM2 1401 aa11.24□□□□□ -0.61
VRK3-211ENST00000596445 NCAPD2Q15021 1401 aa11.24□□□□□ -0.61
VRK3-211ENST00000596445 IL2RBP14784 551 aa11.23□□□□□ -0.61
VRK3-211ENST00000596445 USHBP1Q8N6Y0 703 aa11.23□□□□□ -0.61
VRK3-211ENST00000596445 A0A0G2JS52 829 aa11.22□□□□□ -0.61
VRK3-211ENST00000596445 MYT1Q01538 1121 aa11.22□□□□□ -0.61
VRK3-211ENST00000596445 LRRC37A3O60309 1634 aa11.21□□□□□ -0.61
VRK3-211ENST00000596445 ILDR2Q71H61 639 aa11.21□□□□□ -0.61
VRK3-211ENST00000596445 RAPGEF4Q8WZA2 1011 aa11.21□□□□□ -0.61
VRK3-211ENST00000596445 NUDCQ9Y266 331 aa11.21□□□□□ -0.61
VRK3-211ENST00000596445 KDRP35968 1356 aa11.2□□□□□ -0.62
VRK3-211ENST00000596445 EXOC5O00471 708 aa11.2□□□□□ -0.62
VRK3-211ENST00000596445 TATP17735 454 aaPredicted RBP11.2□□□□□ -0.62
VRK3-211ENST00000596445 DDB1Q16531 1140 aa11.2□□□□□ -0.62
VRK3-211ENST00000596445 SULT6B1Q6IMI4 303 aa11.2□□□□□ -0.62
VRK3-211ENST00000596445 MEGF6O75095 1541 aa11.19□□□□□ -0.62
VRK3-211ENST00000596445 OVOS2A0A0G2JMS6 1433 aa11.19□□□□□ -0.62
VRK3-211ENST00000596445 PLEKHG2Q9H7P9 1386 aa11.19□□□□□ -0.62
VRK3-211ENST00000596445 U2SURPO15042 1029 aaKnown RBP11.19□□□□□ -0.62
VRK3-211ENST00000596445 PDE3BQ13370 1112 aa11.19□□□□□ -0.62
VRK3-211ENST00000596445 DIEXFQ68CQ4 756 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms