RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 EIF4A2Q14240 407 aaKnown RBP19.63■□□□□ 0.73
SHKBP1-211ENST00000595945 IP6K1Q92551 441 aa19.63■□□□□ 0.73
SHKBP1-211ENST00000595945 CPDO75976 1380 aa19.62■□□□□ 0.73
SHKBP1-211ENST00000595945 LRRC59Q96AG4 307 aaKnown RBP19.62■□□□□ 0.73
SHKBP1-211ENST00000595945 U2AF1L5P0DN76 240 aaPredicted RBP19.61■□□□□ 0.73
SHKBP1-211ENST00000595945 U2AF1Q01081 240 aaKnown RBP eCLIP19.61■□□□□ 0.73
SHKBP1-211ENST00000595945 CABLES1Q8TDN4 633 aa19.61■□□□□ 0.73
SHKBP1-211ENST00000595945 RGPD2P0DJD1 1756 aa19.61■□□□□ 0.73
SHKBP1-211ENST00000595945 ZBED9Q6R2W3 1325 aa19.6■□□□□ 0.73
SHKBP1-211ENST00000595945 U2SURPO15042 1029 aaKnown RBP19.6■□□□□ 0.73
SHKBP1-211ENST00000595945 CAMTA1Q9Y6Y1 1673 aa19.59■□□□□ 0.73
SHKBP1-211ENST00000595945 PIP4K2BP78356 416 aa19.59■□□□□ 0.73
SHKBP1-211ENST00000595945 LMO7Q8WWI1 1683 aa19.58■□□□□ 0.72
SHKBP1-211ENST00000595945 FCHSD2O94868 740 aa19.57■□□□□ 0.72
SHKBP1-211ENST00000595945 CCDC146Q8IYE0 955 aa19.57■□□□□ 0.72
SHKBP1-211ENST00000595945 RUNDC1Q96C34 613 aa19.57■□□□□ 0.72
SHKBP1-211ENST00000595945 PLEKHF1Q96S99 279 aa19.57■□□□□ 0.72
SHKBP1-211ENST00000595945 RSPH6AQ9H0K4 717 aa19.57■□□□□ 0.72
SHKBP1-211ENST00000595945 FAM208AQ9UK61 1670 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-211ENST00000595945 PLEKHG5O94827 1062 aa19.56■□□□□ 0.72
SHKBP1-211ENST00000595945 ZC3H6P61129 1189 aaKnown RBP19.56■□□□□ 0.72
SHKBP1-211ENST00000595945 IGSF1Q8N6C5 1336 aa19.55■□□□□ 0.72
SHKBP1-211ENST00000595945 KIAA0232Q92628 1395 aa19.55■□□□□ 0.72
SHKBP1-211ENST00000595945 NCAPD2Q15021 1401 aa19.54■□□□□ 0.72
SHKBP1-211ENST00000595945 EYA1Q99502 592 aa19.54■□□□□ 0.72
SHKBP1-211ENST00000595945 KDRP35968 1356 aa19.54■□□□□ 0.72
SHKBP1-211ENST00000595945 DLG5Q8TDM6 1919 aa19.53■□□□□ 0.72
SHKBP1-211ENST00000595945 APAF1O14727 1248 aa19.53■□□□□ 0.72
SHKBP1-211ENST00000595945 CENPBP07199 599 aaPredicted RBP19.53■□□□□ 0.72
SHKBP1-211ENST00000595945 PNNQ9H307 717 aaKnown RBP19.53■□□□□ 0.72
SHKBP1-211ENST00000595945 AXIN2Q9Y2T1 843 aa19.53■□□□□ 0.72
SHKBP1-211ENST00000595945 ZBTB7CA1YPR0 619 aa19.52■□□□□ 0.72
SHKBP1-211ENST00000595945 NCBP3Q53F19 620 aaKnown RBP19.52■□□□□ 0.72
SHKBP1-211ENST00000595945 NGEFQ8N5V2 710 aa19.52■□□□□ 0.72
SHKBP1-211ENST00000595945 HMOX1P09601 288 aa19.51■□□□□ 0.71
SHKBP1-211ENST00000595945 PRKAR2BP31323 418 aa19.51■□□□□ 0.71
SHKBP1-211ENST00000595945 COL14A1Q05707 1796 aaKnown RBP19.51■□□□□ 0.71
SHKBP1-211ENST00000595945 ZNF521Q96K83 1311 aa19.51■□□□□ 0.71
SHKBP1-211ENST00000595945 AEBP1Q8IUX7 1158 aa19.5■□□□□ 0.71
SHKBP1-211ENST00000595945 TCP11L2Q8N4U5 519 aa19.5■□□□□ 0.71
SHKBP1-211ENST00000595945 SENP3-EIF4A1A0A087X0R7 540 aa19.49■□□□□ 0.71
SHKBP1-211ENST00000595945 SULT6B1Q6IMI4 303 aa19.49■□□□□ 0.71
SHKBP1-211ENST00000595945 ANKRD24Q8TF21 1146 aa19.49■□□□□ 0.71
SHKBP1-211ENST00000595945 LTV1Q96GA3 475 aaPredicted RBP19.49■□□□□ 0.71
SHKBP1-211ENST00000595945 ERBB3P21860 1342 aa19.49■□□□□ 0.71
SHKBP1-211ENST00000595945 CHRNA2Q15822 529 aa19.48■□□□□ 0.71
SHKBP1-211ENST00000595945 PHF23Q9BUL5 403 aaPredicted RBP19.48■□□□□ 0.71
SHKBP1-211ENST00000595945 HAP1P54257 671 aaPredicted RBP19.47■□□□□ 0.71
SHKBP1-211ENST00000595945 NBPF6Q5VWK0 638 aa19.47■□□□□ 0.71
SHKBP1-211ENST00000595945 NBPF4Q96M43 638 aa19.47■□□□□ 0.71
SHKBP1-211ENST00000595945 PRDM11Q9NQV5 511 aa19.47■□□□□ 0.71
SHKBP1-211ENST00000595945 MAPK8IP3Q9UPT6 1336 aa19.47■□□□□ 0.71
SHKBP1-211ENST00000595945 PHACTR3Q96KR7 559 aa19.46■□□□□ 0.71
SHKBP1-211ENST00000595945 JCADQ9P266 1359 aa19.45■□□□□ 0.7
SHKBP1-211ENST00000595945 TMPOP42166 694 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-211ENST00000595945 CCDC27Q2M243 656 aa19.45■□□□□ 0.7
SHKBP1-211ENST00000595945 PLCH1Q4KWH8 1693 aa19.45■□□□□ 0.7
SHKBP1-211ENST00000595945 COL5A2P05997 1499 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-211ENST00000595945 FAM83GA6ND36 823 aa19.44■□□□□ 0.7
SHKBP1-211ENST00000595945 PDE3BQ13370 1112 aa19.44■□□□□ 0.7
SHKBP1-211ENST00000595945 SALL2Q9Y467 1007 aaPredicted RBP19.44■□□□□ 0.7
SHKBP1-211ENST00000595945 NRAPQ86VF7 1730 aa19.42■□□□□ 0.7
SHKBP1-211ENST00000595945 NFE2L2Q16236 605 aa19.42■□□□□ 0.7
SHKBP1-211ENST00000595945 RRP7AQ9Y3A4 280 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-211ENST00000595945 NWD2Q9ULI1 1742 aa19.42■□□□□ 0.7
SHKBP1-211ENST00000595945 NEFMP07197 916 aa19.41■□□□□ 0.7
SHKBP1-211ENST00000595945 USHBP1Q8N6Y0 703 aa19.41■□□□□ 0.7
SHKBP1-211ENST00000595945 WWC1Q8IX03 1113 aa19.4■□□□□ 0.7
SHKBP1-211ENST00000595945 TRIM35Q9UPQ4 493 aa19.4■□□□□ 0.7
SHKBP1-211ENST00000595945 WDR17Q8IZU2 1322 aa19.4■□□□□ 0.7
SHKBP1-211ENST00000595945 HSPA1LP34931 641 aa19.39■□□□□ 0.69
SHKBP1-211ENST00000595945 NEUROD2Q15784 382 aa19.39■□□□□ 0.69
SHKBP1-211ENST00000595945 PLEKHG2Q9H7P9 1386 aa19.39■□□□□ 0.69
SHKBP1-211ENST00000595945 RIPK4P57078 832 aa19.38■□□□□ 0.69
SHKBP1-211ENST00000595945 VIRMAQ69YN4 1812 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-211ENST00000595945 PKD1L3Q7Z443 1732 aa19.37■□□□□ 0.69
SHKBP1-211ENST00000595945 WDR63Q8IWG1 891 aa19.37■□□□□ 0.69
SHKBP1-211ENST00000595945 NLRP2Q9NX02 1062 aa19.37■□□□□ 0.69
SHKBP1-211ENST00000595945 SPATA31A6Q5VVP1 1343 aa19.36■□□□□ 0.69
SHKBP1-211ENST00000595945 CSB-PGBD3P0DP91 1061 aa19.36■□□□□ 0.69
SHKBP1-211ENST00000595945 GOLGA2Q08379 1002 aa19.36■□□□□ 0.69
SHKBP1-211ENST00000595945 CDCA7LQ96GN5 454 aa19.36■□□□□ 0.69
SHKBP1-211ENST00000595945 PARP4Q9UKK3 1724 aaKnown RBP19.36■□□□□ 0.69
SHKBP1-211ENST00000595945 WNK3Q9BYP7 1800 aa19.35■□□□□ 0.69
SHKBP1-211ENST00000595945 SLFN5Q08AF3 891 aa19.35■□□□□ 0.69
SHKBP1-211ENST00000595945 MTHFSDQ2M296 383 aaKnown RBP19.35■□□□□ 0.69
SHKBP1-211ENST00000595945 TRMT2AQ8IZ69 625 aaKnown RBP19.35■□□□□ 0.69
SHKBP1-211ENST00000595945 LRP6O75581 1613 aa19.35■□□□□ 0.69
SHKBP1-211ENST00000595945 SLIT2O94813 1529 aa19.35■□□□□ 0.69
SHKBP1-211ENST00000595945 GAS2L2Q8NHY3 880 aa19.34■□□□□ 0.69
SHKBP1-211ENST00000595945 CARD10Q9BWT7 1032 aa19.34■□□□□ 0.69
SHKBP1-211ENST00000595945 BTG4Q9NY30 223 aa19.34■□□□□ 0.69
SHKBP1-211ENST00000595945 LRRC37A3O60309 1634 aa19.33■□□□□ 0.69
SHKBP1-211ENST00000595945 NUTM2BA6NNL0 878 aaPredicted RBP19.33■□□□□ 0.68
SHKBP1-211ENST00000595945 NUTM2EB1AL46 878 aaPredicted RBP19.33■□□□□ 0.68
SHKBP1-211ENST00000595945 ADAMTS2O95450 1211 aa19.33■□□□□ 0.68
SHKBP1-211ENST00000595945 NUTM2AQ8IVF1 878 aaPredicted RBP19.33■□□□□ 0.68
SHKBP1-211ENST00000595945 MEGF6O75095 1541 aa19.33■□□□□ 0.68
SHKBP1-211ENST00000595945 CRB1P82279 1406 aa19.33■□□□□ 0.68
SHKBP1-211ENST00000595945 IL16Q14005 1332 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms