RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 TOM1L2Q6ZVM7 507 aa20.23■□□□□ 0.83
SHKBP1-208ENST00000595726 SGIP1Q9BQI5 828 aa20.23■□□□□ 0.83
SHKBP1-208ENST00000595726 RGPD3A6NKT7 1758 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-208ENST00000595726 RGPD4Q7Z3J3 1758 aa20.21■□□□□ 0.83
SHKBP1-208ENST00000595726 MTFR1LQ9H019 292 aa20.21■□□□□ 0.83
SHKBP1-208ENST00000595726 LRRC37A3O60309 1634 aa20.2■□□□□ 0.82
SHKBP1-208ENST00000595726 AXIN2Q9Y2T1 843 aa20.2■□□□□ 0.82
SHKBP1-208ENST00000595726 ARXQ96QS3 562 aa20.19■□□□□ 0.82
SHKBP1-208ENST00000595726 ARHGEF28Q8N1W1 1705 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-208ENST00000595726 AATKQ6ZMQ8 1374 aa20.18■□□□□ 0.82
SHKBP1-208ENST00000595726 NLRP6P59044 892 aa20.17■□□□□ 0.82
SHKBP1-208ENST00000595726 TOPAZ1Q8N9V7 1692 aa20.16■□□□□ 0.82
SHKBP1-208ENST00000595726 GPR162Q16538 588 aa20.16■□□□□ 0.82
SHKBP1-208ENST00000595726 CHD4Q14839 1912 aa20.15■□□□□ 0.82
SHKBP1-208ENST00000595726 GIGYF1O75420 1035 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-208ENST00000595726 CABP2Q9NPB3 220 aa20.14■□□□□ 0.81
SHKBP1-208ENST00000595726 PPIP5K1Q6PFW1 1433 aa20.13■□□□□ 0.81
SHKBP1-208ENST00000595726 WDR17Q8IZU2 1322 aa20.13■□□□□ 0.81
SHKBP1-208ENST00000595726 SRPK2P78362 688 aaKnown RBP20.13■□□□□ 0.81
SHKBP1-208ENST00000595726 BCL9O00512 1426 aa20.12■□□□□ 0.81
SHKBP1-208ENST00000595726 EXOC5O00471 708 aa20.12■□□□□ 0.81
SHKBP1-208ENST00000595726 PELP1Q8IZL8 1130 aaKnown RBP20.11■□□□□ 0.81
SHKBP1-208ENST00000595726 ACSBG1Q96GR2 724 aa20.11■□□□□ 0.81
SHKBP1-208ENST00000595726 KLHL34Q8N239 644 aa20.1■□□□□ 0.81
SHKBP1-208ENST00000595726 CDCA7Q9BWT1 371 aaPredicted RBP20.1■□□□□ 0.81
SHKBP1-208ENST00000595726 CABP1Q9NZU7 370 aa20.1■□□□□ 0.81
SHKBP1-208ENST00000595726 SOX12O15370 315 aa20.09■□□□□ 0.81
SHKBP1-208ENST00000595726 CSB-PGBD3P0DP91 1061 aa20.09■□□□□ 0.81
SHKBP1-208ENST00000595726 STAC3Q96MF2 364 aa20.09■□□□□ 0.81
SHKBP1-208ENST00000595726 CARD10Q9BWT7 1032 aa20.09■□□□□ 0.81
SHKBP1-208ENST00000595726 ZNF827Q17R98 1081 aa20.08■□□□□ 0.81
SHKBP1-208ENST00000595726 NBPF1Q3BBV0 1214 aa20.08■□□□□ 0.81
SHKBP1-208ENST00000595726 COL18A1P39060 1754 aa20.08■□□□□ 0.8
SHKBP1-208ENST00000595726 MAP3K5Q99683 1374 aa20.08■□□□□ 0.8
SHKBP1-208ENST00000595726 SLIT3O75094 1523 aa20.07■□□□□ 0.8
SHKBP1-208ENST00000595726 ARHGEF25Q86VW2 580 aa20.06■□□□□ 0.8
SHKBP1-208ENST00000595726 AKAP12Q02952 1782 aa20.06■□□□□ 0.8
SHKBP1-208ENST00000595726 USP6P35125 1406 aa20.05■□□□□ 0.8
SHKBP1-208ENST00000595726 LRRC4BQ9NT99 713 aa20.05■□□□□ 0.8
SHKBP1-208ENST00000595726 RAB3GAP2Q9H2M9 1393 aa20.05■□□□□ 0.8
SHKBP1-208ENST00000595726 WNK3Q9BYP7 1800 aa20.04■□□□□ 0.8
SHKBP1-208ENST00000595726 CPSF1Q10570 1443 aaKnown RBP20.03■□□□□ 0.8
SHKBP1-208ENST00000595726 NLGN2Q8NFZ4 835 aa20.03■□□□□ 0.8
SHKBP1-208ENST00000595726 BRD4O60885 1362 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-208ENST00000595726 RGPD5Q99666 1765 aa20■□□□□ 0.79
SHKBP1-208ENST00000595726 CENPJQ9HC77 1338 aaPredicted RBP20■□□□□ 0.79
SHKBP1-208ENST00000595726 AKT1S1Q96B36 256 aa19.99■□□□□ 0.79
SHKBP1-208ENST00000595726 PIK3C2AO00443 1686 aa19.99■□□□□ 0.79
SHKBP1-208ENST00000595726 SHANK3Q9BYB0 1731 aa19.99■□□□□ 0.79
SHKBP1-208ENST00000595726 PAPPAQ13219 1627 aa19.98■□□□□ 0.79
SHKBP1-208ENST00000595726 YBX3P16989 372 aaKnown RBP eCLIP19.98■□□□□ 0.79
SHKBP1-208ENST00000595726 KCNH5Q8NCM2 988 aa19.98■□□□□ 0.79
SHKBP1-208ENST00000595726 TNS2Q63HR2 1409 aa19.98■□□□□ 0.79
SHKBP1-208ENST00000595726 POLD1P28340 1107 aa19.97■□□□□ 0.79
SHKBP1-208ENST00000595726 KCNQ4P56696 695 aa19.97■□□□□ 0.79
SHKBP1-208ENST00000595726 TTC21BQ7Z4L5 1316 aa19.97■□□□□ 0.79
SHKBP1-208ENST00000595726 NHSQ6T4R5 1651 aa19.97■□□□□ 0.79
SHKBP1-208ENST00000595726 CCDC7Q96M83 1385 aa19.96■□□□□ 0.79
SHKBP1-208ENST00000595726 SLC16A10Q8TF71 515 aa19.95■□□□□ 0.78
SHKBP1-208ENST00000595726 NLRP2Q9NX02 1062 aa19.95■□□□□ 0.78
SHKBP1-208ENST00000595726 PNPLA7Q6ZV29 1317 aa19.95■□□□□ 0.78
SHKBP1-208ENST00000595726 TFCP2L1Q9NZI6 479 aa19.92■□□□□ 0.78
SHKBP1-208ENST00000595726 BTAF1O14981 1849 aa19.92■□□□□ 0.78
SHKBP1-208ENST00000595726 TRPM1Q7Z4N2 1603 aa19.91■□□□□ 0.78
SHKBP1-208ENST00000595726 IL2RBP14784 551 aa19.91■□□□□ 0.78
SHKBP1-208ENST00000595726 KAT6BQ8WYB5 2073 aa19.9■□□□□ 0.78
SHKBP1-208ENST00000595726 GRIN3BO60391 1043 aa19.9■□□□□ 0.78
SHKBP1-208ENST00000595726 ATP10DQ9P241 1426 aa19.9■□□□□ 0.78
SHKBP1-208ENST00000595726 NFAT5O94916 1531 aa19.89■□□□□ 0.77
SHKBP1-208ENST00000595726 ZNF526Q8TF50 670 aaPredicted RBP19.89■□□□□ 0.77
SHKBP1-208ENST00000595726 ZNF692Q9BU19 519 aaPredicted RBP19.89■□□□□ 0.77
SHKBP1-208ENST00000595726 ABCC6O95255 1503 aa19.88■□□□□ 0.77
SHKBP1-208ENST00000595726 SLC27A3Q5K4L6 730 aa19.88■□□□□ 0.77
SHKBP1-208ENST00000595726 DDX54Q8TDD1 881 aaKnown RBP19.88■□□□□ 0.77
SHKBP1-208ENST00000595726 KIAA1210Q9ULL0 1709 aa19.88■□□□□ 0.77
SHKBP1-208ENST00000595726 ERBB3P21860 1342 aa19.87■□□□□ 0.77
SHKBP1-208ENST00000595726 EVC2Q86UK5 1308 aa19.86■□□□□ 0.77
SHKBP1-208ENST00000595726 TTC21AQ8NDW8 1320 aa19.86■□□□□ 0.77
SHKBP1-208ENST00000595726 MSH5O43196 834 aa19.86■□□□□ 0.77
SHKBP1-208ENST00000595726 HSPA6P17066 643 aa19.86■□□□□ 0.77
SHKBP1-208ENST00000595726 GPBP1L1Q9HC44 474 aaPredicted RBP19.86■□□□□ 0.77
SHKBP1-208ENST00000595726 QRICH2Q9H0J4 1663 aa19.86■□□□□ 0.77
SHKBP1-208ENST00000595726 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.85■□□□□ 0.77
SHKBP1-208ENST00000595726 ANKRD24Q8TF21 1146 aa19.85■□□□□ 0.77
SHKBP1-208ENST00000595726 SYTL4Q96C24 671 aaPredicted RBP19.85■□□□□ 0.77
SHKBP1-208ENST00000595726 PRIM1P49642 420 aaKnown RBP19.84■□□□□ 0.77
SHKBP1-208ENST00000595726 MSL1Q68DK7 614 aa19.84■□□□□ 0.77
SHKBP1-208ENST00000595726 COL24A1Q17RW2 1714 aa19.84■□□□□ 0.77
SHKBP1-208ENST00000595726 COL23A1Q86Y22 540 aaPredicted RBP19.83■□□□□ 0.77
SHKBP1-208ENST00000595726 KTN1Q86UP2 1357 aaKnown RBP19.83■□□□□ 0.76
SHKBP1-208ENST00000595726 NME9Q86XW9 330 aa19.81■□□□□ 0.76
SHKBP1-208ENST00000595726 TUBGCP6Q96RT7 1819 aa19.81■□□□□ 0.76
SHKBP1-208ENST00000595726 QSER1Q2KHR3 1735 aa19.79■□□□□ 0.76
SHKBP1-208ENST00000595726 WWC3Q9ULE0 1092 aa19.79■□□□□ 0.76
SHKBP1-208ENST00000595726 CCNL1Q9UK58 526 aaPredicted RBP19.78■□□□□ 0.76
SHKBP1-208ENST00000595726 LTV1Q96GA3 475 aaPredicted RBP19.77■□□□□ 0.76
SHKBP1-208ENST00000595726 ADCY9O60503 1353 aa19.75■□□□□ 0.75
SHKBP1-208ENST00000595726 NSD2O96028 1365 aa19.75■□□□□ 0.75
SHKBP1-208ENST00000595726 USP31Q70CQ4 1352 aa19.75■□□□□ 0.75
SHKBP1-208ENST00000595726 ANKRD36BQ8N2N9 1353 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms