RNA–Protein interactions for RNA: ENST00000595081.5

PNKP-205, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 2

Gene PNKP, Length 513 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-205	ENST00000595081	MAP3K19	Q56UN5	1328 aa		31.34	■■■□□ 2.61
PNKP-205	ENST00000595081	RRS1	Q15050	365 aa	Known RBP	31.34	■■■□□ 2.61
PNKP-205	ENST00000595081	CCDC9	Q9Y3X0	531 aa	Known RBP	31.34	■■■□□ 2.61
PNKP-205	ENST00000595081	ANKRD26	Q9UPS8	1709 aa		31.34	■■■□□ 2.61
PNKP-205	ENST00000595081	COL5A2	P05997	1499 aa	Predicted RBP	31.33	■■■□□ 2.61
PNKP-205	ENST00000595081	EVA1C	P58658	441 aa		31.33	■■■□□ 2.61
PNKP-205	ENST00000595081	RBM6	P78332	1123 aa	Known RBP	31.33	■■■□□ 2.61
PNKP-205	ENST00000595081	GJD4	Q96KN9	370 aa	Predicted RBP	31.32	■■■□□ 2.6
PNKP-205	ENST00000595081	TNNT2	P45379	298 aa	Predicted RBP	31.31	■■■□□ 2.6
PNKP-205	ENST00000595081	LARP1	Q6PKG0	1096 aa	Known RBP	31.3	■■■□□ 2.6
PNKP-205	ENST00000595081	ABCC6	O95255	1503 aa		31.29	■■■□□ 2.6
PNKP-205	ENST00000595081	MORC1	Q86VD1	984 aa		31.29	■■■□□ 2.6
PNKP-205	ENST00000595081	RGPD5	Q99666	1765 aa		31.29	■■■□□ 2.6
PNKP-205	ENST00000595081	GLI3	P10071	1580 aa		31.29	■■■□□ 2.6
PNKP-205	ENST00000595081	AMPH	P49418	695 aa		31.28	■■■□□ 2.6
PNKP-205	ENST00000595081	CNGB1	Q14028	1251 aa	Predicted RBP	31.28	■■■□□ 2.6
PNKP-205	ENST00000595081	CC2D1B	Q5T0F9	858 aa	Known RBP	31.28	■■■□□ 2.6
PNKP-205	ENST00000595081	IP6K1	Q92551	441 aa		31.27	■■■□□ 2.6
PNKP-205	ENST00000595081	SPATA31A5	Q5VU36	1347 aa		31.26	■■■□□ 2.6
PNKP-205	ENST00000595081	SPATA31A7	Q8IWB4	1347 aa		31.26	■■■□□ 2.6
PNKP-205	ENST00000595081	HOXC9	P31274	260 aa		31.25	■■■□□ 2.59
PNKP-205	ENST00000595081	DDX10	Q13206	875 aa	Known RBP	31.25	■■■□□ 2.59
PNKP-205	ENST00000595081	EMILIN1	Q9Y6C2	1016 aa		31.25	■■■□□ 2.59
PNKP-205	ENST00000595081	USP35	Q9P2H5	1018 aa		31.23	■■■□□ 2.59
PNKP-205	ENST00000595081	PEAK1	Q9H792	1746 aa		31.23	■■■□□ 2.59
PNKP-205	ENST00000595081	SPATA31A1	Q5TZJ5	1347 aa		31.23	■■■□□ 2.59
PNKP-205	ENST00000595081	WDR17	Q8IZU2	1322 aa		31.23	■■■□□ 2.59
PNKP-205	ENST00000595081	RTL1	A6NKG5	1358 aa		31.22	■■■□□ 2.59
PNKP-205	ENST00000595081	NPC1L1	Q9UHC9	1359 aa		31.22	■■■□□ 2.59
PNKP-205	ENST00000595081	CSB-PGBD3	P0DP91	1061 aa		31.22	■■■□□ 2.59
PNKP-205	ENST00000595081	RGS12	O14924	1447 aa		31.22	■■■□□ 2.59
PNKP-205	ENST00000595081	BLM	P54132	1417 aa	Predicted RBP	31.22	■■■□□ 2.59
PNKP-205	ENST00000595081	ZNF316	A6NFI3	1004 aa	Predicted RBP	31.21	■■■□□ 2.59
PNKP-205	ENST00000595081	PPM1G	O15355	546 aa	Predicted RBP	31.21	■■■□□ 2.59
PNKP-205	ENST00000595081	ANKRD24	Q8TF21	1146 aa		31.21	■■■□□ 2.59
PNKP-205	ENST00000595081	POLK	Q9UBT6	870 aa		31.21	■■■□□ 2.59
PNKP-205	ENST00000595081	ERBB3	P21860	1342 aa		31.21	■■■□□ 2.59
PNKP-205	ENST00000595081	TOM1L2	Q6ZVM7	507 aa		31.2	■■■□□ 2.59
PNKP-205	ENST00000595081	LTV1	Q96GA3	475 aa	Predicted RBP	31.2	■■■□□ 2.59
PNKP-205	ENST00000595081	CRB1	P82279	1406 aa		31.2	■■■□□ 2.59
PNKP-205	ENST00000595081	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.2	■■■□□ 2.58
PNKP-205	ENST00000595081	FLT4	P35916	1363 aa		31.18	■■■□□ 2.58
PNKP-205	ENST00000595081	FAM98C	Q17RN3	349 aa	Known RBP	31.18	■■■□□ 2.58
PNKP-205	ENST00000595081	MAP2	P11137	1827 aa	Known RBP	31.17	■■■□□ 2.58
PNKP-205	ENST00000595081	HSP90AB2P	Q58FF8	381 aa		31.17	■■■□□ 2.58
PNKP-205	ENST00000595081	KIF24	Q5T7B8	1368 aa		31.17	■■■□□ 2.58
PNKP-205	ENST00000595081	TCP11L2	Q8N4U5	519 aa		31.14	■■■□□ 2.58
PNKP-205	ENST00000595081	NLRP2	Q9NX02	1062 aa		31.13	■■■□□ 2.57
PNKP-205	ENST00000595081	INSR	P06213	1382 aa		31.13	■■■□□ 2.57
PNKP-205	ENST00000595081		A0A0G2JS52	829 aa		31.12	■■■□□ 2.57
PNKP-205	ENST00000595081	ONECUT3	O60422	494 aa	Predicted RBP	31.12	■■■□□ 2.57
PNKP-205	ENST00000595081	MYT1	Q01538	1121 aa		31.12	■■■□□ 2.57
PNKP-205	ENST00000595081	SEPT12	Q8IYM1	358 aa		31.12	■■■□□ 2.57
PNKP-205	ENST00000595081	CARD10	Q9BWT7	1032 aa		31.12	■■■□□ 2.57
PNKP-205	ENST00000595081	SMG6	Q86US8	1419 aa	Known RBP	31.11	■■■□□ 2.57
PNKP-205	ENST00000595081	BARGIN	Q6ZT62	677 aa		31.09	■■■□□ 2.57
PNKP-205	ENST00000595081	THRAP3	Q9Y2W1	955 aa	Known RBP	31.09	■■■□□ 2.57
PNKP-205	ENST00000595081	THSD7A	Q9UPZ6	1657 aa		31.07	■■■□□ 2.56
PNKP-205	ENST00000595081	FAM208A	Q9UK61	1670 aa	Known RBP	31.05	■■■□□ 2.56
PNKP-205	ENST00000595081	MTHFS	P49914	203 aa		31.04	■■■□□ 2.56
PNKP-205	ENST00000595081	RGPD2	P0DJD1	1756 aa		31.03	■■■□□ 2.56
PNKP-205	ENST00000595081	NBPF6	Q5VWK0	638 aa		31.03	■■■□□ 2.56
PNKP-205	ENST00000595081	NBPF4	Q96M43	638 aa		31.03	■■■□□ 2.56
PNKP-205	ENST00000595081	BRWD3	Q6RI45	1802 aa		31.01	■■■□□ 2.56
PNKP-205	ENST00000595081	EIF4A2	Q14240	407 aa	Known RBP	31.01	■■■□□ 2.55
PNKP-205	ENST00000595081	USHBP1	Q8N6Y0	703 aa		31	■■■□□ 2.55
PNKP-205	ENST00000595081	DISP2	A7MBM2	1401 aa		30.99	■■■□□ 2.55
PNKP-205	ENST00000595081	WNK3	Q9BYP7	1800 aa		30.99	■■■□□ 2.55
PNKP-205	ENST00000595081	PARD3	Q8TEW0	1356 aa		30.98	■■■□□ 2.55
PNKP-205	ENST00000595081	PPP2R1A	P30153	589 aa		30.97	■■■□□ 2.55
PNKP-205	ENST00000595081	KRT27	Q7Z3Y8	459 aa		30.96	■■■□□ 2.55
PNKP-205	ENST00000595081	CDCA7	Q9BWT1	371 aa	Predicted RBP	30.95	■■■□□ 2.55
PNKP-205	ENST00000595081	PARP4	Q9UKK3	1724 aa	Known RBP	30.95	■■■□□ 2.54
PNKP-205	ENST00000595081	IL2RB	P14784	551 aa		30.94	■■■□□ 2.54
PNKP-205	ENST00000595081	EYA1	Q99502	592 aa		30.94	■■■□□ 2.54
PNKP-205	ENST00000595081	LRRC37A3	O60309	1634 aa		30.94	■■■□□ 2.54
PNKP-205	ENST00000595081	DDB1	Q16531	1140 aa		30.91	■■■□□ 2.54
PNKP-205	ENST00000595081	FAM182B	Q5T319	152 aa		30.91	■■■□□ 2.54
PNKP-205	ENST00000595081	IL13	P35225	146 aa		30.9	■■■□□ 2.54
PNKP-205	ENST00000595081	PDE3B	Q13370	1112 aa		30.9	■■■□□ 2.54
PNKP-205	ENST00000595081	MEGF6	O75095	1541 aa		30.89	■■■□□ 2.54
PNKP-205	ENST00000595081	NCAPD2	Q15021	1401 aa		30.89	■■■□□ 2.53
PNKP-205	ENST00000595081	COL3A1	P02461	1466 aa	Predicted RBP	30.89	■■■□□ 2.53
PNKP-205	ENST00000595081	EP400	Q96L91	3159 aa		30.89	■■■□□ 2.53
PNKP-205	ENST00000595081	RALBP1	Q15311	655 aa		30.88	■■■□□ 2.53
PNKP-205	ENST00000595081	IGSF1	Q8N6C5	1336 aa		30.87	■■■□□ 2.53
PNKP-205	ENST00000595081	EXOC5	O00471	708 aa		30.86	■■■□□ 2.53
PNKP-205	ENST00000595081	SOCS7	O14512	581 aa		30.86	■■■□□ 2.53
PNKP-205	ENST00000595081	TNS2	Q63HR2	1409 aa		30.86	■■■□□ 2.53
PNKP-205	ENST00000595081	DIAPH1	O60610	1272 aa	Known RBP	30.85	■■■□□ 2.53
PNKP-205	ENST00000595081	RAPGEF4	Q8WZA2	1011 aa		30.85	■■■□□ 2.53
PNKP-205	ENST00000595081	OVOS2	A0A0G2JMS6	1433 aa		30.83	■■■□□ 2.53
PNKP-205	ENST00000595081	CFAP53	Q96M91	514 aa		30.83	■■■□□ 2.53
PNKP-205	ENST00000595081	RGPD1	P0DJD0	1748 aa		30.81	■■■□□ 2.52
PNKP-205	ENST00000595081	TAT	P17735	454 aa	Predicted RBP	30.81	■■■□□ 2.52
PNKP-205	ENST00000595081	AEBP1	Q8IUX7	1158 aa		30.81	■■■□□ 2.52
PNKP-205	ENST00000595081	MARCH10	Q8NA82	808 aa	Predicted RBP	30.81	■■■□□ 2.52
PNKP-205	ENST00000595081	PRKRIP1	Q9H875	184 aa	Predicted RBP	30.81	■■■□□ 2.52
PNKP-205	ENST00000595081	SULT6B1	Q6IMI4	303 aa		30.78	■■■□□ 2.52
PNKP-205	ENST00000595081	ZCRB1	Q8TBF4	217 aa	Known RBP	30.78	■■■□□ 2.52

Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms