RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 OVOS2Q6IE36 1432 aa34.08■■■■□ 3.05
LSM4-202ENST00000593564 RREB1Q92766 1687 aa34.07■■■■□ 3.04
LSM4-202ENST00000593564 CARD11Q9BXL7 1154 aa34.07■■■■□ 3.04
LSM4-202ENST00000593564 LRRC37A3O60309 1634 aa34.05■■■■□ 3.04
LSM4-202ENST00000593564 DDB1Q16531 1140 aa34.05■■■■□ 3.04
LSM4-202ENST00000593564 PEAK1Q9H792 1746 aa34.04■■■■□ 3.04
LSM4-202ENST00000593564 NFAT5O94916 1531 aa34.04■■■■□ 3.04
LSM4-202ENST00000593564 SOX12O15370 315 aa34.03■■■■□ 3.04
LSM4-202ENST00000593564 CDCA7Q9BWT1 371 aaPredicted RBP34.02■■■■□ 3.04
LSM4-202ENST00000593564 NUP188Q5SRE5 1749 aa34.01■■■■□ 3.04
LSM4-202ENST00000593564 MON2Q7Z3U7 1717 aa34.01■■■■□ 3.04
LSM4-202ENST00000593564 ABCC6O95255 1503 aa33.99■■■■□ 3.03
LSM4-202ENST00000593564 USP31Q70CQ4 1352 aa33.99■■■■□ 3.03
LSM4-202ENST00000593564 NBPF14Q5TI25 921 aa33.99■■■■□ 3.03
LSM4-202ENST00000593564 CARD10Q9BWT7 1032 aa33.99■■■■□ 3.03
LSM4-202ENST00000593564 TONSLQ96HA7 1378 aa33.98■■■■□ 3.03
LSM4-202ENST00000593564 WNK3Q9BYP7 1800 aa33.98■■■■□ 3.03
LSM4-202ENST00000593564 CSB-PGBD3P0DP91 1061 aa33.98■■■■□ 3.03
LSM4-202ENST00000593564 CD163L1Q9NR16 1453 aa33.98■■■■□ 3.03
LSM4-202ENST00000593564 SUGP2Q8IX01 1082 aaKnown RBP eCLIP33.96■■■■□ 3.03
LSM4-202ENST00000593564 RGPD5Q99666 1765 aa33.95■■■■□ 3.02
LSM4-202ENST00000593564 BCL9O00512 1426 aa33.95■■■■□ 3.02
LSM4-202ENST00000593564 PLSCR1O15162 318 aa33.93■■■■□ 3.02
LSM4-202ENST00000593564 MARCH10Q8NA82 808 aaPredicted RBP33.93■■■■□ 3.02
LSM4-202ENST00000593564 TMC1Q8TDI8 760 aa33.93■■■■□ 3.02
LSM4-202ENST00000593564 USP54Q70EL1 1684 aa33.93■■■■□ 3.02
LSM4-202ENST00000593564 BCL11BQ9C0K0 894 aaPredicted RBP33.92■■■■□ 3.02
LSM4-202ENST00000593564 CCDC7Q96M83 1385 aa33.92■■■■□ 3.02
LSM4-202ENST00000593564 SBF2Q86WG5 1849 aa33.92■■■■□ 3.02
LSM4-202ENST00000593564 RGPD3A6NKT7 1758 aaPredicted RBP33.91■■■■□ 3.02
LSM4-202ENST00000593564 RGPD4Q7Z3J3 1758 aa33.91■■■■□ 3.02
LSM4-202ENST00000593564 HDGFL2Q7Z4V5 671 aaPredicted RBP33.91■■■■□ 3.02
LSM4-202ENST00000593564 NME9Q86XW9 330 aa33.91■■■■□ 3.02
LSM4-202ENST00000593564 PUS7Q96PZ0 661 aaKnown RBP33.9■■■■□ 3.02
LSM4-202ENST00000593564 SLC12A5Q9H2X9 1139 aa33.9■■■■□ 3.02
LSM4-202ENST00000593564 EDC4Q6P2E9 1401 aaKnown RBP33.88■■■■□ 3.01
LSM4-202ENST00000593564 PTF1AQ7RTS3 328 aa33.86■■■■□ 3.01
LSM4-202ENST00000593564 TERF2IPQ9NYB0 399 aa33.86■■■■□ 3.01
LSM4-202ENST00000593564 ERBB3P21860 1342 aa33.85■■■■□ 3.01
LSM4-202ENST00000593564 EXOC5O00471 708 aa33.85■■■■□ 3.01
LSM4-202ENST00000593564 A0A1W2PP64 1363 aa33.85■■■■□ 3.01
LSM4-202ENST00000593564 TNS2Q63HR2 1409 aa33.83■■■■□ 3.01
LSM4-202ENST00000593564 TESK2Q96S53 571 aa33.8■■■■□ 3
LSM4-202ENST00000593564 NLRP2Q9NX02 1062 aa33.79■■■■□ 3
LSM4-202ENST00000593564 NINLQ9Y2I6 1382 aa33.78■■■■□ 3
LSM4-202ENST00000593564 LTN1O94822 1766 aa33.77■■■■□ 3
LSM4-202ENST00000593564 PROM2Q8N271 834 aa33.77■■■■□ 3
LSM4-202ENST00000593564 SPON1Q9HCB6 807 aa33.77■■■■□ 3
LSM4-202ENST00000593564 ANO8Q9HCE9 1232 aaPredicted RBP33.77■■■■□ 3
LSM4-202ENST00000593564 ST20-MTHFSA0A0A6YYL1 179 aa33.75■■■□□ 2.99
LSM4-202ENST00000593564 KCNQ2O43526 872 aa33.75■■■□□ 2.99
LSM4-202ENST00000593564 ANKRD24Q8TF21 1146 aa33.75■■■□□ 2.99
LSM4-202ENST00000593564 SLC24A1O60721 1099 aa33.74■■■□□ 2.99
LSM4-202ENST00000593564 IL2RBP14784 551 aa33.73■■■□□ 2.99
LSM4-202ENST00000593564 TXNRD1Q16881 649 aa33.7■■■□□ 2.99
LSM4-202ENST00000593564 IP6K1Q92551 441 aa33.68■■■□□ 2.98
LSM4-202ENST00000593564 PPP1R1BQ9UD71 204 aaPredicted RBP33.68■■■□□ 2.98
LSM4-202ENST00000593564 NHSQ6T4R5 1651 aa33.67■■■□□ 2.98
LSM4-202ENST00000593564 CASZ1Q86V15 1759 aa33.66■■■□□ 2.98
LSM4-202ENST00000593564 COG3Q96JB2 828 aa33.64■■■□□ 2.98
LSM4-202ENST00000593564 TRIM26Q12899 539 aaPredicted RBP33.63■■■□□ 2.97
LSM4-202ENST00000593564 ACSBG1Q96GR2 724 aa33.63■■■□□ 2.97
LSM4-202ENST00000593564 ANKRD36BQ8N2N9 1353 aa33.62■■■□□ 2.97
LSM4-202ENST00000593564 STK32BQ9NY57 414 aa33.62■■■□□ 2.97
LSM4-202ENST00000593564 PDGFDQ9GZP0 370 aaPredicted RBP33.61■■■□□ 2.97
LSM4-202ENST00000593564 FAM208AQ9UK61 1670 aaKnown RBP33.59■■■□□ 2.97
LSM4-202ENST00000593564 SLC15A2Q16348 729 aa33.59■■■□□ 2.97
LSM4-202ENST00000593564 MAP3K19Q56UN5 1328 aa33.58■■■□□ 2.97
LSM4-202ENST00000593564 LTV1Q96GA3 475 aaPredicted RBP33.57■■■□□ 2.96
LSM4-202ENST00000593564 USP47Q96K76 1375 aa33.57■■■□□ 2.96
LSM4-202ENST00000593564 HOXC9P31274 260 aa33.56■■■□□ 2.96
LSM4-202ENST00000593564 TMF1P82094 1093 aa33.56■■■□□ 2.96
LSM4-202ENST00000593564 ZBTB7AO95365 584 aa33.55■■■□□ 2.96
LSM4-202ENST00000593564 AMPHP49418 695 aa33.54■■■□□ 2.96
LSM4-202ENST00000593564 BTAF1O14981 1849 aa33.51■■■□□ 2.96
LSM4-202ENST00000593564 RTL1A6NKG5 1358 aa33.51■■■□□ 2.96
LSM4-202ENST00000593564 FBLN1P23142 703 aa33.51■■■□□ 2.95
LSM4-202ENST00000593564 PTGER2P43116 358 aa33.5■■■□□ 2.95
LSM4-202ENST00000593564 DDX54Q8TDD1 881 aaKnown RBP33.5■■■□□ 2.95
LSM4-202ENST00000593564 PAPPAQ13219 1627 aa33.5■■■□□ 2.95
LSM4-202ENST00000593564 FYB1O15117 783 aa33.48■■■□□ 2.95
LSM4-202ENST00000593564 ATF5Q9Y2D1 282 aaPredicted RBP33.48■■■□□ 2.95
LSM4-202ENST00000593564 DCAF8L1A6NGE4 600 aa33.46■■■□□ 2.95
LSM4-202ENST00000593564 CDCA8Q53HL2 280 aa33.46■■■□□ 2.95
LSM4-202ENST00000593564 MTFR1LQ9H019 292 aa33.46■■■□□ 2.95
LSM4-202ENST00000593564 GGNBP2Q9H3C7 697 aa33.45■■■□□ 2.95
LSM4-202ENST00000593564 KAT6BQ8WYB5 2073 aa33.44■■■□□ 2.94
LSM4-202ENST00000593564 RRS1Q15050 365 aaKnown RBP33.44■■■□□ 2.94
LSM4-202ENST00000593564 MYOM1P52179 1685 aa33.44■■■□□ 2.94
LSM4-202ENST00000593564 LRRC4BQ9NT99 713 aa33.43■■■□□ 2.94
LSM4-202ENST00000593564 YY1P25490 414 aa33.42■■■□□ 2.94
LSM4-202ENST00000593564 MEGF6O75095 1541 aa33.42■■■□□ 2.94
LSM4-202ENST00000593564 ZCRB1Q8TBF4 217 aaKnown RBP33.41■■■□□ 2.94
LSM4-202ENST00000593564 SGIP1Q9BQI5 828 aa33.41■■■□□ 2.94
LSM4-202ENST00000593564 ZNF827Q17R98 1081 aa33.4■■■□□ 2.94
LSM4-202ENST00000593564 SLC27A3Q5K4L6 730 aa33.4■■■□□ 2.94
LSM4-202ENST00000593564 NBPF6Q5VWK0 638 aa33.39■■■□□ 2.94
LSM4-202ENST00000593564 NBPF4Q96M43 638 aa33.39■■■□□ 2.94
LSM4-202ENST00000593564 RGPD2P0DJD1 1756 aa33.39■■■□□ 2.94
LSM4-202ENST00000593564 SMG6Q86US8 1419 aaKnown RBP33.37■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms