RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 SPATA31A5Q5VU36 1347 aa13.23□□□□□ -0.29
DDX39A-220ENST00000593008 SPATA31A7Q8IWB4 1347 aa13.23□□□□□ -0.29
DDX39A-220ENST00000593008 NRAPQ86VF7 1730 aa13.23□□□□□ -0.29
DDX39A-220ENST00000593008 FYB1O15117 783 aa13.22□□□□□ -0.29
DDX39A-220ENST00000593008 LARP1Q6PKG0 1096 aaKnown RBP13.22□□□□□ -0.29
DDX39A-220ENST00000593008 SLIT3O75094 1523 aa13.22□□□□□ -0.29
DDX39A-220ENST00000593008 CAMTA1Q9Y6Y1 1673 aa13.21□□□□□ -0.29
DDX39A-220ENST00000593008 KNSTRNQ9Y448 316 aa13.21□□□□□ -0.29
DDX39A-220ENST00000593008 ANKRD26Q9UPS8 1709 aa13.21□□□□□ -0.3
DDX39A-220ENST00000593008 USP54Q70EL1 1684 aa13.21□□□□□ -0.3
DDX39A-220ENST00000593008 EP400Q96L91 3159 aa13.2□□□□□ -0.3
DDX39A-220ENST00000593008 SPATA31A1Q5TZJ5 1347 aa13.2□□□□□ -0.3
DDX39A-220ENST00000593008 ONECUT3O60422 494 aaPredicted RBP13.2□□□□□ -0.3
DDX39A-220ENST00000593008 TNNT2P45379 298 aaPredicted RBP13.2□□□□□ -0.3
DDX39A-220ENST00000593008 KCNH5Q8NCM2 988 aa13.2□□□□□ -0.3
DDX39A-220ENST00000593008 AXIN2Q9Y2T1 843 aa13.2□□□□□ -0.3
DDX39A-220ENST00000593008 CGNL1Q0VF96 1302 aa13.19□□□□□ -0.3
DDX39A-220ENST00000593008 ARHGEF25Q86VW2 580 aa13.19□□□□□ -0.3
DDX39A-220ENST00000593008 AATKQ6ZMQ8 1374 aa13.19□□□□□ -0.3
DDX39A-220ENST00000593008 USP31Q70CQ4 1352 aa13.19□□□□□ -0.3
DDX39A-220ENST00000593008 NFAT5O94916 1531 aa13.18□□□□□ -0.3
DDX39A-220ENST00000593008 FAM182BQ5T319 152 aa13.18□□□□□ -0.3
DDX39A-220ENST00000593008 KRT27Q7Z3Y8 459 aa13.18□□□□□ -0.3
DDX39A-220ENST00000593008 LMO7Q8WWI1 1683 aa13.18□□□□□ -0.3
DDX39A-220ENST00000593008 COL5A2P05997 1499 aaPredicted RBP13.17□□□□□ -0.3
DDX39A-220ENST00000593008 PEAK1Q9H792 1746 aa13.16□□□□□ -0.3
DDX39A-220ENST00000593008 DIEXFQ68CQ4 756 aaKnown RBP13.16□□□□□ -0.3
DDX39A-220ENST00000593008 TOM1L2Q6ZVM7 507 aa13.16□□□□□ -0.3
DDX39A-220ENST00000593008 TCP11L2Q8N4U5 519 aa13.16□□□□□ -0.3
DDX39A-220ENST00000593008 PARD3Q8TEW0 1356 aa13.16□□□□□ -0.3
DDX39A-220ENST00000593008 CSB-PGBD3P0DP91 1061 aa13.15□□□□□ -0.3
DDX39A-220ENST00000593008 COG3Q96JB2 828 aa13.15□□□□□ -0.3
DDX39A-220ENST00000593008 NSD2O96028 1365 aa13.15□□□□□ -0.3
DDX39A-220ENST00000593008 BRWD3Q6RI45 1802 aa13.14□□□□□ -0.31
DDX39A-220ENST00000593008 RRS1Q15050 365 aaKnown RBP13.14□□□□□ -0.31
DDX39A-220ENST00000593008 MORC1Q86VD1 984 aa13.14□□□□□ -0.31
DDX39A-220ENST00000593008 NPC1L1Q9UHC9 1359 aa13.14□□□□□ -0.31
DDX39A-220ENST00000593008 CRB1P82279 1406 aa13.13□□□□□ -0.31
DDX39A-220ENST00000593008 BARGINQ6ZT62 677 aa13.13□□□□□ -0.31
DDX39A-220ENST00000593008 PRKRIP1Q9H875 184 aaPredicted RBP13.13□□□□□ -0.31
DDX39A-220ENST00000593008 EMILIN1Q9Y6C2 1016 aa13.13□□□□□ -0.31
DDX39A-220ENST00000593008 WDR17Q8IZU2 1322 aa13.13□□□□□ -0.31
DDX39A-220ENST00000593008 COL18A1P39060 1754 aa13.12□□□□□ -0.31
DDX39A-220ENST00000593008 CCDC184Q52MB2 194 aa13.12□□□□□ -0.31
DDX39A-220ENST00000593008 LTN1O94822 1766 aa13.12□□□□□ -0.31
DDX39A-220ENST00000593008 THSD7AQ9UPZ6 1657 aa13.12□□□□□ -0.31
DDX39A-220ENST00000593008 LTV1Q96GA3 475 aaPredicted RBP13.11□□□□□ -0.31
DDX39A-220ENST00000593008 THRAP3Q9Y2W1 955 aaKnown RBP13.11□□□□□ -0.31
DDX39A-220ENST00000593008 MAP3K19Q56UN5 1328 aa13.11□□□□□ -0.31
DDX39A-220ENST00000593008 PPP2R1AP30153 589 aa13.1□□□□□ -0.31
DDX39A-220ENST00000593008 PDE3BQ13370 1112 aa13.1□□□□□ -0.31
DDX39A-220ENST00000593008 DEFB132Q7Z7B7 95 aa13.1□□□□□ -0.31
DDX39A-220ENST00000593008 ANKRD24Q8TF21 1146 aa13.1□□□□□ -0.31
DDX39A-220ENST00000593008 BLMP54132 1417 aaPredicted RBP13.09□□□□□ -0.31
DDX39A-220ENST00000593008 SF3B2Q13435 895 aaKnown RBP13.09□□□□□ -0.31
DDX39A-220ENST00000593008 SMG6Q86US8 1419 aaKnown RBP13.09□□□□□ -0.31
DDX39A-220ENST00000593008 CCDC125Q86Z20 511 aa13.09□□□□□ -0.31
DDX39A-220ENST00000593008 MIER1Q8N108 512 aa13.09□□□□□ -0.31
DDX39A-220ENST00000593008 CARD10Q9BWT7 1032 aa13.09□□□□□ -0.31
DDX39A-220ENST00000593008 NLRP2Q9NX02 1062 aa13.09□□□□□ -0.31
DDX39A-220ENST00000593008 COL3A1P02461 1466 aaPredicted RBP13.09□□□□□ -0.31
DDX39A-220ENST00000593008 RGPD5Q99666 1765 aa13.08□□□□□ -0.32
DDX39A-220ENST00000593008 AMPHP49418 695 aa13.08□□□□□ -0.32
DDX39A-220ENST00000593008 IP6K1Q92551 441 aa13.08□□□□□ -0.32
DDX39A-220ENST00000593008 POLKQ9UBT6 870 aa13.08□□□□□ -0.32
DDX39A-220ENST00000593008 ERBB3P21860 1342 aa13.08□□□□□ -0.32
DDX39A-220ENST00000593008 PPM1GO15355 546 aaPredicted RBP13.07□□□□□ -0.32
DDX39A-220ENST00000593008 ANP32CO43423 234 aa13.07□□□□□ -0.32
DDX39A-220ENST00000593008 HOXC9P31274 260 aa13.07□□□□□ -0.32
DDX39A-220ENST00000593008 MAP2P11137 1827 aaKnown RBP13.06□□□□□ -0.32
DDX39A-220ENST00000593008 TRIM37O94972 964 aa13.06□□□□□ -0.32
DDX39A-220ENST00000593008 DDB1Q16531 1140 aa13.06□□□□□ -0.32
DDX39A-220ENST00000593008 FAM196AQ6ZSG2 479 aa13.06□□□□□ -0.32
DDX39A-220ENST00000593008 ABCC6O95255 1503 aa13.06□□□□□ -0.32
DDX39A-220ENST00000593008 MYBBP1AQ9BQG0 1328 aaKnown RBP13.06□□□□□ -0.32
DDX39A-220ENST00000593008 MTHFSP49914 203 aa13.05□□□□□ -0.32
DDX39A-220ENST00000593008 RALBP1Q15311 655 aa13.05□□□□□ -0.32
DDX39A-220ENST00000593008 HSP90AB2PQ58FF8 381 aa13.05□□□□□ -0.32
DDX39A-220ENST00000593008 CDCA7Q9BWT1 371 aaPredicted RBP13.03□□□□□ -0.32
DDX39A-220ENST00000593008 EXOC5O00471 708 aa13.02□□□□□ -0.33
DDX39A-220ENST00000593008 BAG6P46379 1132 aa13.02□□□□□ -0.33
DDX39A-220ENST00000593008 EN1Q05925 392 aaPredicted RBP13.02□□□□□ -0.33
DDX39A-220ENST00000593008 MARCH10Q8NA82 808 aaPredicted RBP13.02□□□□□ -0.33
DDX39A-220ENST00000593008 FLT4P35916 1363 aa13.02□□□□□ -0.33
DDX39A-220ENST00000593008 DISP2A7MBM2 1401 aa13.02□□□□□ -0.33
DDX39A-220ENST00000593008 LRRC37A3O60309 1634 aa13.02□□□□□ -0.33
DDX39A-220ENST00000593008 PARP4Q9UKK3 1724 aaKnown RBP13.02□□□□□ -0.33
DDX39A-220ENST00000593008 RGPD2P0DJD1 1756 aa13.02□□□□□ -0.33
DDX39A-220ENST00000593008 APBA3O96018 575 aa13.01□□□□□ -0.33
DDX39A-220ENST00000593008 IL2RBP14784 551 aa13.01□□□□□ -0.33
DDX39A-220ENST00000593008 USHBP1Q8N6Y0 703 aa13.01□□□□□ -0.33
DDX39A-220ENST00000593008 RTL1A6NKG5 1358 aa13.01□□□□□ -0.33
DDX39A-220ENST00000593008 OVOS2A0A0G2JMS6 1433 aa13□□□□□ -0.33
DDX39A-220ENST00000593008 EIF4A2Q14240 407 aaKnown RBP13□□□□□ -0.33
DDX39A-220ENST00000593008 PTF1AQ7RTS3 328 aa13□□□□□ -0.33
DDX39A-220ENST00000593008 NBPF6Q5VWK0 638 aa12.99□□□□□ -0.33
DDX39A-220ENST00000593008 NBPF4Q96M43 638 aa12.99□□□□□ -0.33
DDX39A-220ENST00000593008 INSRP06213 1382 aa12.98□□□□□ -0.33
DDX39A-220ENST00000593008 SENP3-EIF4A1A0A087X0R7 540 aa12.98□□□□□ -0.33
DDX39A-220ENST00000593008 EZH2Q15910 746 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms