RNA–Protein interactions for RNA: ENST00000592991.1

LDLRAD4-218, Transcript of low density lipoprotein receptor class A domain containing 4, human

TSL 1 (best) BASIC

Gene LDLRAD4, Length 1,640 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LDLRAD4-218	ENST00000592991	ZC3H6	P61129	1189 aa	Known RBP	34.04	■■■■□ 3.04
LDLRAD4-218	ENST00000592991	ABCA3	Q99758	1704 aa		34.04	■■■■□ 3.04
LDLRAD4-218	ENST00000592991	ARHGEF25	Q86VW2	580 aa		34.01	■■■■□ 3.04
LDLRAD4-218	ENST00000592991	RTL1	A6NKG5	1358 aa		34.01	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	SALL2	Q9Y467	1007 aa	Predicted RBP	34.01	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	COL16A1	Q07092	1604 aa	Predicted RBP	34	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	KIF24	Q5T7B8	1368 aa		34	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	IP6K1	Q92551	441 aa		33.97	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	HMOX1	P09601	288 aa		33.97	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	LTV1	Q96GA3	475 aa	Predicted RBP	33.97	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	RGPD1	P0DJD0	1748 aa		33.96	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	ZBED9	Q6R2W3	1325 aa		33.96	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	LRRC59	Q96AG4	307 aa	Known RBP	33.96	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	RGPD5	Q99666	1765 aa		33.96	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	CENPB	P07199	599 aa	Predicted RBP	33.95	■■■■□ 3.03
LDLRAD4-218	ENST00000592991	APAF1	O14727	1248 aa		33.93	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	KIAA0232	Q92628	1395 aa		33.93	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	RUNDC1	Q96C34	613 aa		33.92	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	CHRNA2	Q15822	529 aa		33.91	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	COL18A1	P39060	1754 aa		33.91	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	HAP1	P54257	671 aa	Predicted RBP	33.9	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	AEBP1	Q8IUX7	1158 aa		33.9	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	RSPH6A	Q9H0K4	717 aa		33.9	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	AXIN2	Q9Y2T1	843 aa		33.9	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	PLEKHF1	Q96S99	279 aa		33.9	■■■■□ 3.02
LDLRAD4-218	ENST00000592991	RGPD2	P0DJD1	1756 aa		33.88	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	COL22A1	Q8NFW1	1626 aa	Predicted RBP	33.88	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	PRKAR2B	P31323	418 aa		33.87	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	SULT6B1	Q6IMI4	303 aa		33.86	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	EYA1	Q99502	592 aa		33.86	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	RRP7A	Q9Y3A4	280 aa	Known RBP	33.86	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	CPD	O75976	1380 aa		33.86	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	FCHSD2	O94868	740 aa		33.85	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	TCP11L2	Q8N4U5	519 aa		33.85	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	ANKRD24	Q8TF21	1146 aa		33.82	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	IGSF1	Q8N6C5	1336 aa		33.82	■■■■□ 3.01
LDLRAD4-218	ENST00000592991	MAPK8IP3	Q9UPT6	1336 aa		33.81	■■■■□ 3
LDLRAD4-218	ENST00000592991	NEUROD2	Q15784	382 aa		33.81	■■■■□ 3
LDLRAD4-218	ENST00000592991	USHBP1	Q8N6Y0	703 aa		33.81	■■■■□ 3
LDLRAD4-218	ENST00000592991	PRDM11	Q9NQV5	511 aa		33.81	■■■■□ 3
LDLRAD4-218	ENST00000592991	PHACTR3	Q96KR7	559 aa		33.79	■■■■□ 3
LDLRAD4-218	ENST00000592991	ABCC6	O95255	1503 aa		33.78	■■■■□ 3
LDLRAD4-218	ENST00000592991	LMO7	Q8WWI1	1683 aa		33.77	■■■■□ 3
LDLRAD4-218	ENST00000592991	NBPF6	Q5VWK0	638 aa		33.77	■■■■□ 3
LDLRAD4-218	ENST00000592991	NBPF4	Q96M43	638 aa		33.77	■■■■□ 3
LDLRAD4-218	ENST00000592991	PNN	Q9H307	717 aa	Known RBP	33.77	■■■■□ 3
LDLRAD4-218	ENST00000592991	ERBB3	P21860	1342 aa		33.76	■■■□□ 2.99
LDLRAD4-218	ENST00000592991	KDR	P35968	1356 aa		33.75	■■■□□ 2.99
LDLRAD4-218	ENST00000592991	CAMTA1	Q9Y6Y1	1673 aa		33.74	■■■□□ 2.99
LDLRAD4-218	ENST00000592991	TMPO	P42166	694 aa	Known RBP	33.72	■■■□□ 2.99
LDLRAD4-218	ENST00000592991	FAM83G	A6ND36	823 aa		33.71	■■■□□ 2.99
LDLRAD4-218	ENST00000592991	ZNF521	Q96K83	1311 aa		33.71	■■■□□ 2.99
LDLRAD4-218	ENST00000592991	NEFM	P07197	916 aa		33.7	■■■□□ 2.99
LDLRAD4-218	ENST00000592991	CDCA7L	Q96GN5	454 aa		33.69	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	NUTM2B	A6NNL0	878 aa	Predicted RBP	33.68	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	NUTM2E	B1AL46	878 aa	Predicted RBP	33.68	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	NUTM2A	Q8IVF1	878 aa	Predicted RBP	33.68	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	CSB-PGBD3	P0DP91	1061 aa		33.68	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	DLG5	Q8TDM6	1919 aa		33.68	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	COL5A2	P05997	1499 aa	Predicted RBP	33.66	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	ADAMTS2	O95450	1211 aa		33.66	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	HSPA1L	P34931	641 aa		33.66	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	NFE2L2	Q16236	605 aa		33.66	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	WWC1	Q8IX03	1113 aa		33.66	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	NCAPD2	Q15021	1401 aa		33.66	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	FAM208A	Q9UK61	1670 aa	Known RBP	33.65	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	RIPK4	P57078	832 aa		33.65	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	NLRP2	Q9NX02	1062 aa		33.65	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	COL14A1	Q05707	1796 aa	Known RBP	33.65	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	JCAD	Q9P266	1359 aa		33.64	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	PHF23	Q9BUL5	403 aa	Predicted RBP	33.64	■■■□□ 2.98
LDLRAD4-218	ENST00000592991	TRIM35	Q9UPQ4	493 aa		33.63	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	NGEF	Q8N5V2	710 aa		33.62	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	STRN4	Q9NRL3	753 aa		33.61	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	CCDC27	Q2M243	656 aa		33.6	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	SPINK5	Q9NQ38	1064 aa	Predicted RBP	33.6	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	BTG4	Q9NY30	223 aa		33.59	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	PLCH1	Q4KWH8	1693 aa		33.59	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	GOLGA2	Q08379	1002 aa		33.58	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	PDE3B	Q13370	1112 aa		33.58	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	MTHFSD	Q2M296	383 aa	Known RBP	33.58	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	WDR17	Q8IZU2	1322 aa		33.58	■■■□□ 2.97
LDLRAD4-218	ENST00000592991	NCBP3	Q53F19	620 aa	Known RBP	33.55	■■■□□ 2.96
LDLRAD4-218	ENST00000592991	LARP1	Q6PKG0	1096 aa	Known RBP	33.55	■■■□□ 2.96
LDLRAD4-218	ENST00000592991	EVA1C	P58658	441 aa		33.54	■■■□□ 2.96
LDLRAD4-218	ENST00000592991	TOM1L2	Q6ZVM7	507 aa		33.54	■■■□□ 2.96
LDLRAD4-218	ENST00000592991	THUMPD2	Q9BTF0	503 aa	Known RBP	33.53	■■■□□ 2.96
LDLRAD4-218	ENST00000592991	MEGF6	O75095	1541 aa		33.51	■■■□□ 2.96
LDLRAD4-218	ENST00000592991	SLFN5	Q08AF3	891 aa		33.51	■■■□□ 2.96
LDLRAD4-218	ENST00000592991	LRP6	O75581	1613 aa		33.51	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	DCTN1	Q14203	1278 aa		33.5	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	WDR63	Q8IWG1	891 aa		33.5	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	NRAP	Q86VF7	1730 aa		33.49	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	GAS2L2	Q8NHY3	880 aa		33.49	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	DUSP27	Q5VZP5	1158 aa		33.46	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	RAPGEF4	Q8WZA2	1011 aa		33.46	■■■□□ 2.95
LDLRAD4-218	ENST00000592991		E9PSI1	815 aa		33.45	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	MCM10	Q7L590	875 aa		33.45	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	CARD10	Q9BWT7	1032 aa		33.45	■■■□□ 2.95
LDLRAD4-218	ENST00000592991	SPATA31A6	Q5VVP1	1343 aa		33.45	■■■□□ 2.94

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms