RNA–Protein interactions for RNA: ENST00000589706.1

SMAD4-208, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 563 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-208ENST00000589706 FBXO45P0C2W1 286 aa8.83□□□□□ -1
SMAD4-208ENST00000589706 BRICD5Q6PL45 260 aa8.83□□□□□ -1
SMAD4-208ENST00000589706 FKBPLQ9UIM3 349 aa8.83□□□□□ -1
SMAD4-208ENST00000589706 PCF11O94913 1555 aaKnown RBP8.82□□□□□ -1
SMAD4-208ENST00000589706 EPRSP07814 1512 aaKnown RBP8.82□□□□□ -1
SMAD4-208ENST00000589706 ZBBXA8MT70 800 aa8.82□□□□□ -1
SMAD4-208ENST00000589706 MFAP1P55081 439 aaKnown RBP8.82□□□□□ -1
SMAD4-208ENST00000589706 KIF21BO75037 1637 aa8.81□□□□□ -1
SMAD4-208ENST00000589706 PPP4CP60510 307 aa8.81□□□□□ -1
SMAD4-208ENST00000589706 ADGRD1Q6QNK2 874 aa8.81□□□□□ -1
SMAD4-208ENST00000589706 SCUBE3Q8IX30 993 aa8.81□□□□□ -1
SMAD4-208ENST00000589706 RGS22Q8NE09 1264 aa8.81□□□□□ -1
SMAD4-208ENST00000589706 ZC3H4Q9UPT8 1303 aaKnown RBP8.8□□□□□ -1
SMAD4-208ENST00000589706 TMEM88BA6NKF7 163 aa8.8□□□□□ -1
SMAD4-208ENST00000589706 FMNL1O95466 1100 aaPredicted RBP8.8□□□□□ -1
SMAD4-208ENST00000589706 F12P00748 615 aaPredicted RBP8.8□□□□□ -1
SMAD4-208ENST00000589706 HSPA2P54652 639 aa8.8□□□□□ -1
SMAD4-208ENST00000589706 THAP11Q96EK4 314 aa8.8□□□□□ -1
SMAD4-208ENST00000589706 VRTNQ9H8Y1 702 aa8.8□□□□□ -1
SMAD4-208ENST00000589706 CUL7Q14999 1698 aa8.8□□□□□ -1
SMAD4-208ENST00000589706 GOLGA8CPA6NN73 597 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 HRO43593 1189 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 JUNDP17535 347 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 APLP1P51693 650 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 PTPRNQ16849 979 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 ANKK1Q8NFD2 765 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 HPS5Q9UPZ3 1129 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 KIAA0586Q9BVV6 1533 aa8.79□□□□□ -1
SMAD4-208ENST00000589706 ADAMTSL3P82987 1691 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 SOWAHBA6NEL2 793 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 NR1I2O75469 434 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 LSM11P83369 360 aaKnown RBP eCLIP8.78□□□□□ -1
SMAD4-208ENST00000589706 KANK4Q5T7N3 995 aaPredicted RBP8.78□□□□□ -1
SMAD4-208ENST00000589706 NFATC2IPQ8NCF5 419 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 BCL11AQ9H165 835 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 MAP10Q9P2G4 905 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 MTMR7Q9Y216 660 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 PCDHB3Q9Y5E6 796 aa8.78□□□□□ -1
SMAD4-208ENST00000589706 PIK3CDO00329 1044 aa8.77□□□□□ -1.01
SMAD4-208ENST00000589706 CTHP32929 405 aa8.77□□□□□ -1.01
SMAD4-208ENST00000589706 STAC3Q96MF2 364 aa8.77□□□□□ -1.01
SMAD4-208ENST00000589706 HS3ST6Q96QI5 342 aa8.77□□□□□ -1.01
SMAD4-208ENST00000589706 TNIKQ9UKE5 1360 aa8.76□□□□□ -1.01
SMAD4-208ENST00000589706 POTEB3A0JP26 581 aa8.76□□□□□ -1.01
SMAD4-208ENST00000589706 POTEBQ6S5H4 581 aa8.76□□□□□ -1.01
SMAD4-208ENST00000589706 TSR3Q9UJK0 312 aaKnown RBP8.76□□□□□ -1.01
SMAD4-208ENST00000589706 UHRF1BP1LA0JNW5 1464 aa8.76□□□□□ -1.01
SMAD4-208ENST00000589706 CENPBP07199 599 aaPredicted RBP8.75□□□□□ -1.01
SMAD4-208ENST00000589706 SKIP12755 728 aa8.75□□□□□ -1.01
SMAD4-208ENST00000589706 BCAMP50895 628 aa8.75□□□□□ -1.01
SMAD4-208ENST00000589706 ELOAQ14241 798 aaKnown RBP8.75□□□□□ -1.01
SMAD4-208ENST00000589706 UACAQ9BZF9 1416 aa8.74□□□□□ -1.01
SMAD4-208ENST00000589706 GPSM3Q9Y4H4 160 aa8.74□□□□□ -1.01
SMAD4-208ENST00000589706 IVNS1ABPQ9Y6Y0 642 aa8.74□□□□□ -1.01
SMAD4-208ENST00000589706 USP17L3A6NCW0 530 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 USP17L4A6NCW7 530 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 CCNYL3P0C7X3 344 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 MSS51Q4VC12 460 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 LHX8Q68G74 356 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 PDXDC2PQ6P474 469 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 USP17L2Q6R6M4 530 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 USP17L1Q7RTZ2 530 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 PLEKHM2Q8IWE5 1019 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 ARMC2Q8NEN0 867 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 KDM5BQ9UGL1 1544 aa8.73□□□□□ -1.01
SMAD4-208ENST00000589706 CARMIL2Q6F5E8 1435 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 CD109Q6YHK3 1445 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 MAGI3Q5TCQ9 1506 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 USP17L5A8MUK1 530 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 PTK2Q05397 1052 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 KCNH2Q12809 1159 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 B4GALNT3Q6L9W6 998 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 FAM174AQ8TBP5 190 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 ZNF592Q92610 1267 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 GPKOWQ92917 476 aaPredicted RBP eCLIP8.72□□□□□ -1.01
SMAD4-208ENST00000589706 WNT2BQ93097 391 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 EVA1BQ9NVM1 165 aa8.72□□□□□ -1.01
SMAD4-208ENST00000589706 DXOO77932 396 aaKnown RBP8.71□□□□□ -1.02
SMAD4-208ENST00000589706 FAM160A2Q8N612 972 aaPredicted RBP8.71□□□□□ -1.02
SMAD4-208ENST00000589706 CEP126Q9P2H0 1117 aa8.71□□□□□ -1.02
SMAD4-208ENST00000589706 ZMIZ1Q9ULJ6 1067 aa8.71□□□□□ -1.02
SMAD4-208ENST00000589706 NOVA2Q9UNW9 492 aaKnown RBP8.71□□□□□ -1.02
SMAD4-208ENST00000589706 BIVM-ERCC5R4GMW8 1640 aa8.71□□□□□ -1.02
SMAD4-208ENST00000589706 ZCCHC11Q5TAX3 1644 aaKnown RBP8.7□□□□□ -1.02
SMAD4-208ENST00000589706 MADDQ8WXG6 1647 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 MMP16P51512 607 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 MCCD1P59942 119 aaPredicted RBP8.7□□□□□ -1.02
SMAD4-208ENST00000589706 SLFNL1Q499Z3 407 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 TMEM164Q5U3C3 297 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 FOXD4L5Q5VV16 416 aaPredicted RBP8.7□□□□□ -1.02
SMAD4-208ENST00000589706 ANKRD13DQ6ZTN6 518 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 DEPDC4Q8N2C3 294 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 FOXD4L4Q8WXT5 416 aaPredicted RBP8.7□□□□□ -1.02
SMAD4-208ENST00000589706 SPSB2Q99619 263 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 NUDT12Q9BQG2 462 aa8.7□□□□□ -1.02
SMAD4-208ENST00000589706 ARID4BQ4LE39 1312 aaPredicted RBP8.7□□□□□ -1.02
SMAD4-208ENST00000589706 BCORL1Q5H9F3 1711 aa8.69□□□□□ -1.02
SMAD4-208ENST00000589706 FAM196BA6NMK8 535 aa8.69□□□□□ -1.02
SMAD4-208ENST00000589706 STK32AQ8WU08 396 aa8.69□□□□□ -1.02
SMAD4-208ENST00000589706 FAM163AQ96GL9 167 aaPredicted RBP8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms