RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	PARP4	Q9UKK3	1724 aa	Known RBP	13.83	□□□□□ -0.2
PTPN2-208	ENST00000589216	SPATA31A1	Q5TZJ5	1347 aa		13.83	□□□□□ -0.2
PTPN2-208	ENST00000589216	LARP1	Q6PKG0	1096 aa	Known RBP	13.82	□□□□□ -0.2
PTPN2-208	ENST00000589216	ARHGEF25	Q86VW2	580 aa		13.81	□□□□□ -0.2
PTPN2-208	ENST00000589216	AXIN2	Q9Y2T1	843 aa		13.81	□□□□□ -0.2
PTPN2-208	ENST00000589216	TNS1	Q9HBL0	1735 aa	Known RBP	13.81	□□□□□ -0.2
PTPN2-208	ENST00000589216	ANKRD26	Q9UPS8	1709 aa		13.81	□□□□□ -0.2
PTPN2-208	ENST00000589216	ONECUT3	O60422	494 aa	Predicted RBP	13.8	□□□□□ -0.2
PTPN2-208	ENST00000589216	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
PTPN2-208	ENST00000589216	PEAK1	Q9H792	1746 aa		13.8	□□□□□ -0.2
PTPN2-208	ENST00000589216	CRB1	P82279	1406 aa		13.8	□□□□□ -0.2
PTPN2-208	ENST00000589216	NSD3	Q9BZ95	1437 aa		13.8	□□□□□ -0.2
PTPN2-208	ENST00000589216		A0A0G2JS52	829 aa		13.79	□□□□□ -0.2
PTPN2-208	ENST00000589216	SLC24A1	O60721	1099 aa		13.79	□□□□□ -0.2
PTPN2-208	ENST00000589216	MYT1	Q01538	1121 aa		13.79	□□□□□ -0.2
PTPN2-208	ENST00000589216	USP35	Q9P2H5	1018 aa		13.79	□□□□□ -0.2
PTPN2-208	ENST00000589216	RGPD2	P0DJD1	1756 aa		13.78	□□□□□ -0.2
PTPN2-208	ENST00000589216	KCNH5	Q8NCM2	988 aa		13.78	□□□□□ -0.2
PTPN2-208	ENST00000589216	CARD14	Q9BXL6	1004 aa		13.78	□□□□□ -0.2
PTPN2-208	ENST00000589216	FAM208A	Q9UK61	1670 aa	Known RBP	13.78	□□□□□ -0.2
PTPN2-208	ENST00000589216	C11orf95	C9JLR9	678 aa	Predicted RBP	13.77	□□□□□ -0.21
PTPN2-208	ENST00000589216	RGPD1	P0DJD0	1748 aa		13.77	□□□□□ -0.21
PTPN2-208	ENST00000589216	CDCA8	Q53HL2	280 aa		13.77	□□□□□ -0.21
PTPN2-208	ENST00000589216	FAM182B	Q5T319	152 aa		13.77	□□□□□ -0.21
PTPN2-208	ENST00000589216	WDR17	Q8IZU2	1322 aa		13.76	□□□□□ -0.21
PTPN2-208	ENST00000589216	FBLN1	P23142	703 aa		13.76	□□□□□ -0.21
PTPN2-208	ENST00000589216	POLR3GL	Q9BT43	218 aa		13.76	□□□□□ -0.21
PTPN2-208	ENST00000589216	DISP2	A7MBM2	1401 aa		13.75	□□□□□ -0.21
PTPN2-208	ENST00000589216	EVA1C	P58658	441 aa		13.75	□□□□□ -0.21
PTPN2-208	ENST00000589216	KRT27	Q7Z3Y8	459 aa		13.75	□□□□□ -0.21
PTPN2-208	ENST00000589216	GGNBP2	Q9H3C7	697 aa		13.75	□□□□□ -0.21
PTPN2-208	ENST00000589216	FYB1	O15117	783 aa		13.74	□□□□□ -0.21
PTPN2-208	ENST00000589216	BARGIN	Q6ZT62	677 aa		13.74	□□□□□ -0.21
PTPN2-208	ENST00000589216	TCP11L2	Q8N4U5	519 aa		13.74	□□□□□ -0.21
PTPN2-208	ENST00000589216	BLM	P54132	1417 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN2-208	ENST00000589216	ERBB3	P21860	1342 aa		13.73	□□□□□ -0.21
PTPN2-208	ENST00000589216	MAP3K19	Q56UN5	1328 aa		13.73	□□□□□ -0.21
PTPN2-208	ENST00000589216	COG3	Q96JB2	828 aa		13.73	□□□□□ -0.21
PTPN2-208	ENST00000589216	SBF2	Q86WG5	1849 aa		13.72	□□□□□ -0.21
PTPN2-208	ENST00000589216	TOM1L2	Q6ZVM7	507 aa		13.72	□□□□□ -0.21
PTPN2-208	ENST00000589216	KIF7	Q2M1P5	1343 aa		13.71	□□□□□ -0.21
PTPN2-208	ENST00000589216	SHANK3	Q9BYB0	1731 aa		13.71	□□□□□ -0.21
PTPN2-208	ENST00000589216	MAP2	P11137	1827 aa	Known RBP	13.7	□□□□□ -0.22
PTPN2-208	ENST00000589216	RTL1	A6NKG5	1358 aa		13.7	□□□□□ -0.22
PTPN2-208	ENST00000589216	CSB-PGBD3	P0DP91	1061 aa		13.69	□□□□□ -0.22
PTPN2-208	ENST00000589216	RRS1	Q15050	365 aa	Known RBP	13.69	□□□□□ -0.22
PTPN2-208	ENST00000589216	ANKRD24	Q8TF21	1146 aa		13.69	□□□□□ -0.22
PTPN2-208	ENST00000589216	THRAP3	Q9Y2W1	955 aa	Known RBP	13.69	□□□□□ -0.22
PTPN2-208	ENST00000589216	TNS2	Q63HR2	1409 aa		13.69	□□□□□ -0.22
PTPN2-208	ENST00000589216	HOXC9	P31274	260 aa		13.68	□□□□□ -0.22
PTPN2-208	ENST00000589216	CARD10	Q9BWT7	1032 aa		13.68	□□□□□ -0.22
PTPN2-208	ENST00000589216	CCDC7	Q96M83	1385 aa		13.68	□□□□□ -0.22
PTPN2-208	ENST00000589216	RREB1	Q92766	1687 aa		13.67	□□□□□ -0.22
PTPN2-208	ENST00000589216	DEFB132	Q7Z7B7	95 aa		13.67	□□□□□ -0.22
PTPN2-208	ENST00000589216	IP6K1	Q92551	441 aa		13.67	□□□□□ -0.22
PTPN2-208	ENST00000589216	OVOS2	A0A0G2JMS6	1433 aa		13.66	□□□□□ -0.22
PTPN2-208	ENST00000589216	LTV1	Q96GA3	475 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPN2-208	ENST00000589216	PANK3	Q9H999	370 aa		13.66	□□□□□ -0.22
PTPN2-208	ENST00000589216	CGNL1	Q0VF96	1302 aa		13.65	□□□□□ -0.22
PTPN2-208	ENST00000589216	MEGF6	O75095	1541 aa		13.65	□□□□□ -0.22
PTPN2-208	ENST00000589216	NUP188	Q5SRE5	1749 aa		13.65	□□□□□ -0.22
PTPN2-208	ENST00000589216	NLRP2	Q9NX02	1062 aa		13.65	□□□□□ -0.22
PTPN2-208	ENST00000589216	EMILIN1	Q9Y6C2	1016 aa		13.65	□□□□□ -0.22
PTPN2-208	ENST00000589216	NHS	Q6T4R5	1651 aa		13.64	□□□□□ -0.23
PTPN2-208	ENST00000589216	FLT4	P35916	1363 aa		13.64	□□□□□ -0.23
PTPN2-208	ENST00000589216	AMPH	P49418	695 aa		13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	PDE3B	Q13370	1112 aa		13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	CCDC125	Q86Z20	511 aa		13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	MARCH10	Q8NA82	808 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	DOT1L	Q8TEK3	1739 aa		13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	SMG6	Q86US8	1419 aa	Known RBP	13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	RGPD3	A6NKT7	1758 aa	Predicted RBP	13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	RGPD4	Q7Z3J3	1758 aa		13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	WASHC2A	Q641Q2	1341 aa		13.63	□□□□□ -0.23
PTPN2-208	ENST00000589216	INSR	P06213	1382 aa		13.62	□□□□□ -0.23
PTPN2-208	ENST00000589216	TRIM37	O94972	964 aa		13.62	□□□□□ -0.23
PTPN2-208	ENST00000589216	DDB1	Q16531	1140 aa		13.62	□□□□□ -0.23
PTPN2-208	ENST00000589216	HSP90AB2P	Q58FF8	381 aa		13.62	□□□□□ -0.23
PTPN2-208	ENST00000589216	PKD1L3	Q7Z443	1732 aa		13.61	□□□□□ -0.23
PTPN2-208	ENST00000589216	NSD2	O96028	1365 aa		13.61	□□□□□ -0.23
PTPN2-208	ENST00000589216	FAM196A	Q6ZSG2	479 aa		13.61	□□□□□ -0.23
PTPN2-208	ENST00000589216	PTF1A	Q7RTS3	328 aa		13.61	□□□□□ -0.23
PTPN2-208	ENST00000589216	USHBP1	Q8N6Y0	703 aa		13.61	□□□□□ -0.23
PTPN2-208	ENST00000589216	KIF24	Q5T7B8	1368 aa		13.6	□□□□□ -0.23
PTPN2-208	ENST00000589216	BTAF1	O14981	1849 aa		13.6	□□□□□ -0.23
PTPN2-208	ENST00000589216	TNNT2	P45379	298 aa	Predicted RBP	13.6	□□□□□ -0.23
PTPN2-208	ENST00000589216	NCAPD2	Q15021	1401 aa		13.6	□□□□□ -0.23
PTPN2-208	ENST00000589216	BCL9	O00512	1426 aa		13.59	□□□□□ -0.23
PTPN2-208	ENST00000589216	IL2RB	P14784	551 aa		13.59	□□□□□ -0.23
PTPN2-208	ENST00000589216	SF3B2	Q13435	895 aa	Known RBP	13.59	□□□□□ -0.23
PTPN2-208	ENST00000589216	NBPF6	Q5VWK0	638 aa		13.59	□□□□□ -0.23
PTPN2-208	ENST00000589216	NBPF4	Q96M43	638 aa		13.59	□□□□□ -0.23
PTPN2-208	ENST00000589216	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.59	□□□□□ -0.23
PTPN2-208	ENST00000589216	TOGARAM1	Q9Y4F4	1720 aa		13.59	□□□□□ -0.23
PTPN2-208	ENST00000589216	EN1	Q05925	392 aa	Predicted RBP	13.58	□□□□□ -0.24
PTPN2-208	ENST00000589216	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.58	□□□□□ -0.24
PTPN2-208	ENST00000589216	POLK	Q9UBT6	870 aa		13.58	□□□□□ -0.24
PTPN2-208	ENST00000589216	PPM1G	O15355	546 aa	Predicted RBP	13.57	□□□□□ -0.24
PTPN2-208	ENST00000589216	BAG6	P46379	1132 aa		13.57	□□□□□ -0.24
PTPN2-208	ENST00000589216	EXOC5	O00471	708 aa		13.55	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 175.8 ms