RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 COL5A2P05997 1499 aaPredicted RBP27.56■■■□□ 2
ATG4D-208ENST00000588667 GLI3P10071 1580 aa27.55■■■□□ 2
ATG4D-208ENST00000588667 PER1O15534 1290 aaPredicted RBP27.54■■■□□ 2
ATG4D-208ENST00000588667 GJD4Q96KN9 370 aaPredicted RBP27.54■■■□□ 2
ATG4D-208ENST00000588667 CDK12Q9NYV4 1490 aaPredicted RBP27.54■■■□□ 2
ATG4D-208ENST00000588667 ILDR2Q71H61 639 aa27.53■■■□□ 2
ATG4D-208ENST00000588667 STRN4Q9NRL3 753 aa27.53■■■□□ 2
ATG4D-208ENST00000588667 AMER1Q5JTC6 1135 aaPredicted RBP27.52■■■□□ 2
ATG4D-208ENST00000588667 MAP3K19Q56UN5 1328 aa27.52■■■□□ 2
ATG4D-208ENST00000588667 EVA1CP58658 441 aa27.52■■■□□ 2
ATG4D-208ENST00000588667 AXIN2Q9Y2T1 843 aa27.52■■■□□ 2
ATG4D-208ENST00000588667 CCDC9Q9Y3X0 531 aaKnown RBP27.51■■□□□ 1.99
ATG4D-208ENST00000588667 FBLN1P23142 703 aa27.5■■□□□ 1.99
ATG4D-208ENST00000588667 BLMP54132 1417 aaPredicted RBP27.5■■□□□ 1.99
ATG4D-208ENST00000588667 MAP2P11137 1827 aaKnown RBP27.5■■□□□ 1.99
ATG4D-208ENST00000588667 RTL1A6NKG5 1358 aa27.49■■□□□ 1.99
ATG4D-208ENST00000588667 SPATA31A5Q5VU36 1347 aa27.49■■□□□ 1.99
ATG4D-208ENST00000588667 SPATA31A7Q8IWB4 1347 aa27.49■■□□□ 1.99
ATG4D-208ENST00000588667 RRS1Q15050 365 aaKnown RBP27.48■■□□□ 1.99
ATG4D-208ENST00000588667 NPC1L1Q9UHC9 1359 aa27.47■■□□□ 1.99
ATG4D-208ENST00000588667 IP6K1Q92551 441 aa27.47■■□□□ 1.99
ATG4D-208ENST00000588667 KIF24Q5T7B8 1368 aa27.47■■□□□ 1.99
ATG4D-208ENST00000588667 RGS12O14924 1447 aa27.46■■□□□ 1.99
ATG4D-208ENST00000588667 DDX10Q13206 875 aaKnown RBP27.46■■□□□ 1.99
ATG4D-208ENST00000588667 LARP1Q6PKG0 1096 aaKnown RBP27.46■■□□□ 1.99
ATG4D-208ENST00000588667 CRB1P82279 1406 aa27.46■■□□□ 1.99
ATG4D-208ENST00000588667 PEAK1Q9H792 1746 aa27.45■■□□□ 1.99
ATG4D-208ENST00000588667 AMPHP49418 695 aa27.45■■□□□ 1.99
ATG4D-208ENST00000588667 SPATA31A1Q5TZJ5 1347 aa27.45■■□□□ 1.99
ATG4D-208ENST00000588667 WDR17Q8IZU2 1322 aa27.45■■□□□ 1.99
ATG4D-208ENST00000588667 MORC1Q86VD1 984 aa27.45■■□□□ 1.98
ATG4D-208ENST00000588667 HOXC9P31274 260 aa27.44■■□□□ 1.98
ATG4D-208ENST00000588667 ERBB3P21860 1342 aa27.44■■□□□ 1.98
ATG4D-208ENST00000588667 FAM208AQ9UK61 1670 aaKnown RBP27.43■■□□□ 1.98
ATG4D-208ENST00000588667 FLT4P35916 1363 aa27.42■■□□□ 1.98
ATG4D-208ENST00000588667 TNNT2P45379 298 aaPredicted RBP27.41■■□□□ 1.98
ATG4D-208ENST00000588667 CSB-PGBD3P0DP91 1061 aa27.41■■□□□ 1.98
ATG4D-208ENST00000588667 CC2D1BQ5T0F9 858 aaKnown RBP27.4■■□□□ 1.98
ATG4D-208ENST00000588667 TOM1L2Q6ZVM7 507 aa27.4■■□□□ 1.98
ATG4D-208ENST00000588667 ANKRD24Q8TF21 1146 aa27.4■■□□□ 1.98
ATG4D-208ENST00000588667 EMILIN1Q9Y6C2 1016 aa27.4■■□□□ 1.98
ATG4D-208ENST00000588667 ONECUT3O60422 494 aaPredicted RBP27.39■■□□□ 1.98
ATG4D-208ENST00000588667 THSD7AQ9UPZ6 1657 aa27.38■■□□□ 1.97
ATG4D-208ENST00000588667 USP35Q9P2H5 1018 aa27.38■■□□□ 1.97
ATG4D-208ENST00000588667 POLKQ9UBT6 870 aa27.38■■□□□ 1.97
ATG4D-208ENST00000588667 SMG6Q86US8 1419 aaKnown RBP27.38■■□□□ 1.97
ATG4D-208ENST00000588667 INSRP06213 1382 aa27.38■■□□□ 1.97
ATG4D-208ENST00000588667 FAM98CQ17RN3 349 aaKnown RBP27.38■■□□□ 1.97
ATG4D-208ENST00000588667 TCP11L2Q8N4U5 519 aa27.38■■□□□ 1.97
ATG4D-208ENST00000588667 THRAP3Q9Y2W1 955 aaKnown RBP27.38■■□□□ 1.97
ATG4D-208ENST00000588667 WNK3Q9BYP7 1800 aa27.37■■□□□ 1.97
ATG4D-208ENST00000588667 BARGINQ6ZT62 677 aa27.36■■□□□ 1.97
ATG4D-208ENST00000588667 CARD10Q9BWT7 1032 aa27.36■■□□□ 1.97
ATG4D-208ENST00000588667 BRWD3Q6RI45 1802 aa27.36■■□□□ 1.97
ATG4D-208ENST00000588667 PPM1GO15355 546 aaPredicted RBP27.34■■□□□ 1.97
ATG4D-208ENST00000588667 HSP90AB2PQ58FF8 381 aa27.34■■□□□ 1.97
ATG4D-208ENST00000588667 SEPT12Q8IYM1 358 aa27.34■■□□□ 1.97
ATG4D-208ENST00000588667 RGPD2P0DJD1 1756 aa27.33■■□□□ 1.97
ATG4D-208ENST00000588667 LTV1Q96GA3 475 aaPredicted RBP27.33■■□□□ 1.97
ATG4D-208ENST00000588667 NLRP2Q9NX02 1062 aa27.32■■□□□ 1.96
ATG4D-208ENST00000588667 PARP4Q9UKK3 1724 aaKnown RBP27.31■■□□□ 1.96
ATG4D-208ENST00000588667 A0A0G2JS52 829 aa27.31■■□□□ 1.96
ATG4D-208ENST00000588667 MYT1Q01538 1121 aa27.31■■□□□ 1.96
ATG4D-208ENST00000588667 CNGB1Q14028 1251 aaPredicted RBP27.3■■□□□ 1.96
ATG4D-208ENST00000588667 MIER1Q8N108 512 aa27.3■■□□□ 1.96
ATG4D-208ENST00000588667 DISP2A7MBM2 1401 aa27.27■■□□□ 1.96
ATG4D-208ENST00000588667 CDCA7Q9BWT1 371 aaPredicted RBP27.26■■□□□ 1.95
ATG4D-208ENST00000588667 LRRC37A3O60309 1634 aa27.25■■□□□ 1.95
ATG4D-208ENST00000588667 EP400Q96L91 3159 aa27.24■■□□□ 1.95
ATG4D-208ENST00000588667 KRT27Q7Z3Y8 459 aa27.23■■□□□ 1.95
ATG4D-208ENST00000588667 MTHFSP49914 203 aa27.22■■□□□ 1.95
ATG4D-208ENST00000588667 NBPF6Q5VWK0 638 aa27.22■■□□□ 1.95
ATG4D-208ENST00000588667 NBPF4Q96M43 638 aa27.22■■□□□ 1.95
ATG4D-208ENST00000588667 PARD3Q8TEW0 1356 aa27.2■■□□□ 1.95
ATG4D-208ENST00000588667 EIF4A2Q14240 407 aaKnown RBP27.2■■□□□ 1.95
ATG4D-208ENST00000588667 IL2RBP14784 551 aa27.19■■□□□ 1.94
ATG4D-208ENST00000588667 NCAPD2Q15021 1401 aa27.19■■□□□ 1.94
ATG4D-208ENST00000588667 SOCS7O14512 581 aa27.19■■□□□ 1.94
ATG4D-208ENST00000588667 ANP32CO43423 234 aa27.18■■□□□ 1.94
ATG4D-208ENST00000588667 DDB1Q16531 1140 aa27.17■■□□□ 1.94
ATG4D-208ENST00000588667 TNS2Q63HR2 1409 aa27.17■■□□□ 1.94
ATG4D-208ENST00000588667 USHBP1Q8N6Y0 703 aa27.16■■□□□ 1.94
ATG4D-208ENST00000588667 PPP2R1AP30153 589 aa27.16■■□□□ 1.94
ATG4D-208ENST00000588667 PDE3BQ13370 1112 aa27.16■■□□□ 1.94
ATG4D-208ENST00000588667 EYA1Q99502 592 aa27.15■■□□□ 1.94
ATG4D-208ENST00000588667 RGPD1P0DJD0 1748 aa27.15■■□□□ 1.94
ATG4D-208ENST00000588667 MEGF6O75095 1541 aa27.14■■□□□ 1.93
ATG4D-208ENST00000588667 COL3A1P02461 1466 aaPredicted RBP27.13■■□□□ 1.93
ATG4D-208ENST00000588667 RALBP1Q15311 655 aa27.12■■□□□ 1.93
ATG4D-208ENST00000588667 IGSF1Q8N6C5 1336 aa27.12■■□□□ 1.93
ATG4D-208ENST00000588667 EXOC5O00471 708 aa27.12■■□□□ 1.93
ATG4D-208ENST00000588667 OVOS2A0A0G2JMS6 1433 aa27.11■■□□□ 1.93
ATG4D-208ENST00000588667 IL13P35225 146 aa27.11■■□□□ 1.93
ATG4D-208ENST00000588667 RAPGEF4Q8WZA2 1011 aa27.11■■□□□ 1.93
ATG4D-208ENST00000588667 CFAP53Q96M91 514 aa27.08■■□□□ 1.93
ATG4D-208ENST00000588667 SHANK3Q9BYB0 1731 aa27.08■■□□□ 1.93
ATG4D-208ENST00000588667 DIAPH1O60610 1272 aaKnown RBP27.08■■□□□ 1.93
ATG4D-208ENST00000588667 TATP17735 454 aaPredicted RBP27.08■■□□□ 1.93
ATG4D-208ENST00000588667 FAM182BQ5T319 152 aa27.08■■□□□ 1.93
ATG4D-208ENST00000588667 PKD1L3Q7Z443 1732 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms