RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 ZBTB7CA1YPR0 619 aa16.12■□□□□ 0.17
VPS4B-202ENST00000588059 BCL11BQ9C0K0 894 aaPredicted RBP16.12■□□□□ 0.17
VPS4B-202ENST00000588059 RGPD5Q99666 1765 aa16.12■□□□□ 0.17
VPS4B-202ENST00000588059 SRPK2P78362 688 aaKnown RBP16.11■□□□□ 0.17
VPS4B-202ENST00000588059 PTGER2P43116 358 aa16.1■□□□□ 0.17
VPS4B-202ENST00000588059 NBPF1Q3BBV0 1214 aa16.1■□□□□ 0.17
VPS4B-202ENST00000588059 TOM1L2Q6ZVM7 507 aa16.1■□□□□ 0.17
VPS4B-202ENST00000588059 PROM2Q8N271 834 aa16.1■□□□□ 0.17
VPS4B-202ENST00000588059 CABP2Q9NPB3 220 aa16.1■□□□□ 0.17
VPS4B-202ENST00000588059 ZBTB7AO95365 584 aa16.09■□□□□ 0.17
VPS4B-202ENST00000588059 NLRP6P59044 892 aa16.09■□□□□ 0.17
VPS4B-202ENST00000588059 MARCH10Q8NA82 808 aaPredicted RBP16.09■□□□□ 0.17
VPS4B-202ENST00000588059 WDR17Q8IZU2 1322 aa16.09■□□□□ 0.17
VPS4B-202ENST00000588059 CPSF1Q10570 1443 aaKnown RBP16.09■□□□□ 0.17
VPS4B-202ENST00000588059 CHD4Q14839 1912 aa16.08■□□□□ 0.16
VPS4B-202ENST00000588059 AXIN2Q9Y2T1 843 aa16.08■□□□□ 0.16
VPS4B-202ENST00000588059 CENPJQ9HC77 1338 aaPredicted RBP16.08■□□□□ 0.16
VPS4B-202ENST00000588059 ZNF784Q8NCA9 323 aaPredicted RBP16.06■□□□□ 0.16
VPS4B-202ENST00000588059 CDCA7Q9BWT1 371 aaPredicted RBP16.06■□□□□ 0.16
VPS4B-202ENST00000588059 CABP1Q9NZU7 370 aa16.06■□□□□ 0.16
VPS4B-202ENST00000588059 NHSQ6T4R5 1651 aa16.05■□□□□ 0.16
VPS4B-202ENST00000588059 TRPM1Q7Z4N2 1603 aa16.05■□□□□ 0.16
VPS4B-202ENST00000588059 TXNRD1Q16881 649 aa16.05■□□□□ 0.16
VPS4B-202ENST00000588059 ATF5Q9Y2D1 282 aaPredicted RBP16.05■□□□□ 0.16
VPS4B-202ENST00000588059 PAPPAQ13219 1627 aa16.05■□□□□ 0.16
VPS4B-202ENST00000588059 UTRNP46939 3433 aa16.04■□□□□ 0.16
VPS4B-202ENST00000588059 FHDC1Q9C0D6 1143 aaPredicted RBP16.04■□□□□ 0.16
VPS4B-202ENST00000588059 STK32BQ9NY57 414 aa16.04■□□□□ 0.16
VPS4B-202ENST00000588059 NFAT5O94916 1531 aa16.04■□□□□ 0.16
VPS4B-202ENST00000588059 TNS2Q63HR2 1409 aa16.03■□□□□ 0.16
VPS4B-202ENST00000588059 SLC15A2Q16348 729 aa16.03■□□□□ 0.16
VPS4B-202ENST00000588059 ARHGEF25Q86VW2 580 aa16.03■□□□□ 0.16
VPS4B-202ENST00000588059 CARD10Q9BWT7 1032 aa16.03■□□□□ 0.16
VPS4B-202ENST00000588059 SGIP1Q9BQI5 828 aa16.02■□□□□ 0.16
VPS4B-202ENST00000588059 SYT17Q9BSW7 474 aa16.02■□□□□ 0.16
VPS4B-202ENST00000588059 ABCC6O95255 1503 aa16.02■□□□□ 0.15
VPS4B-202ENST00000588059 MTFR1LQ9H019 292 aa16.01■□□□□ 0.15
VPS4B-202ENST00000588059 BTAF1O14981 1849 aa16■□□□□ 0.15
VPS4B-202ENST00000588059 CCDC7Q96M83 1385 aa16■□□□□ 0.15
VPS4B-202ENST00000588059 TTC21BQ7Z4L5 1316 aa15.99■□□□□ 0.15
VPS4B-202ENST00000588059 CSB-PGBD3P0DP91 1061 aa15.99■□□□□ 0.15
VPS4B-202ENST00000588059 KCNH5Q8NCM2 988 aa15.99■□□□□ 0.15
VPS4B-202ENST00000588059 EXOC5O00471 708 aa15.98■□□□□ 0.15
VPS4B-202ENST00000588059 SOX12O15370 315 aa15.98■□□□□ 0.15
VPS4B-202ENST00000588059 MAP3K5Q99683 1374 aa15.98■□□□□ 0.15
VPS4B-202ENST00000588059 EVC2Q86UK5 1308 aa15.97■□□□□ 0.15
VPS4B-202ENST00000588059 MON2Q7Z3U7 1717 aa15.97■□□□□ 0.15
VPS4B-202ENST00000588059 TTC21AQ8NDW8 1320 aa15.96■□□□□ 0.15
VPS4B-202ENST00000588059 USP54Q70EL1 1684 aa15.96■□□□□ 0.15
VPS4B-202ENST00000588059 LTN1O94822 1766 aa15.95■□□□□ 0.14
VPS4B-202ENST00000588059 QSER1Q2KHR3 1735 aa15.95■□□□□ 0.14
VPS4B-202ENST00000588059 SENP3-EIF4A1A0A087X0R7 540 aa15.95■□□□□ 0.14
VPS4B-202ENST00000588059 ARXQ96QS3 562 aa15.95■□□□□ 0.14
VPS4B-202ENST00000588059 ZNF692Q9BU19 519 aaPredicted RBP15.95■□□□□ 0.14
VPS4B-202ENST00000588059 COL24A1Q17RW2 1714 aa15.94■□□□□ 0.14
VPS4B-202ENST00000588059 C1QTNF8P60827 252 aa15.94■□□□□ 0.14
VPS4B-202ENST00000588059 ACSBG1Q96GR2 724 aa15.94■□□□□ 0.14
VPS4B-202ENST00000588059 KAT6BQ8WYB5 2073 aa15.94■□□□□ 0.14
VPS4B-202ENST00000588059 ZNF827Q17R98 1081 aa15.93■□□□□ 0.14
VPS4B-202ENST00000588059 ERBB3P21860 1342 aa15.93■□□□□ 0.14
VPS4B-202ENST00000588059 TUBGCP6Q96RT7 1819 aa15.92■□□□□ 0.14
VPS4B-202ENST00000588059 KTN1Q86UP2 1357 aaKnown RBP15.91■□□□□ 0.14
VPS4B-202ENST00000588059 LRRC4BQ9NT99 713 aa15.9■□□□□ 0.14
VPS4B-202ENST00000588059 USP31Q70CQ4 1352 aa15.89■□□□□ 0.13
VPS4B-202ENST00000588059 IL2RBP14784 551 aa15.89■□□□□ 0.13
VPS4B-202ENST00000588059 NLRP2Q9NX02 1062 aa15.89■□□□□ 0.13
VPS4B-202ENST00000588059 SHANK3Q9BYB0 1731 aa15.88■□□□□ 0.13
VPS4B-202ENST00000588059 CD163L1Q9NR16 1453 aa15.87■□□□□ 0.13
VPS4B-202ENST00000588059 GPR162Q16538 588 aa15.87■□□□□ 0.13
VPS4B-202ENST00000588059 L3MBTL2Q969R5 705 aa15.87■□□□□ 0.13
VPS4B-202ENST00000588059 AKT1S1Q96B36 256 aa15.87■□□□□ 0.13
VPS4B-202ENST00000588059 FAM208AQ9UK61 1670 aaKnown RBP15.86■□□□□ 0.13
VPS4B-202ENST00000588059 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.86■□□□□ 0.13
VPS4B-202ENST00000588059 ROCK2O75116 1388 aaKnown RBP15.86■□□□□ 0.13
VPS4B-202ENST00000588059 SBNO2Q9Y2G9 1366 aa15.86■□□□□ 0.13
VPS4B-202ENST00000588059 LY75O60449 1722 aa15.85■□□□□ 0.13
VPS4B-202ENST00000588059 NME9Q86XW9 330 aa15.85■□□□□ 0.13
VPS4B-202ENST00000588059 ANKRD24Q8TF21 1146 aa15.85■□□□□ 0.13
VPS4B-202ENST00000588059 SLC16A10Q8TF71 515 aa15.85■□□□□ 0.13
VPS4B-202ENST00000588059 PNPLA7Q6ZV29 1317 aa15.85■□□□□ 0.13
VPS4B-202ENST00000588059 DOT1LQ8TEK3 1739 aa15.85■□□□□ 0.13
VPS4B-202ENST00000588059 KLHL34Q8N239 644 aa15.84■□□□□ 0.13
VPS4B-202ENST00000588059 GOLGB1Q14789 3259 aaKnown RBP15.83■□□□□ 0.13
VPS4B-202ENST00000588059 GIGYF1O75420 1035 aaPredicted RBP15.83■□□□□ 0.12
VPS4B-202ENST00000588059 SLC27A3Q5K4L6 730 aa15.83■□□□□ 0.12
VPS4B-202ENST00000588059 POLD1P28340 1107 aa15.82■□□□□ 0.12
VPS4B-202ENST00000588059 PELP1Q8IZL8 1130 aaKnown RBP15.81■□□□□ 0.12
VPS4B-202ENST00000588059 NLGN2Q8NFZ4 835 aa15.81■□□□□ 0.12
VPS4B-202ENST00000588059 EDC4Q6P2E9 1401 aaKnown RBP15.8■□□□□ 0.12
VPS4B-202ENST00000588059 NSD2O96028 1365 aa15.8■□□□□ 0.12
VPS4B-202ENST00000588059 KCNQ4P56696 695 aa15.8■□□□□ 0.12
VPS4B-202ENST00000588059 DDX54Q8TDD1 881 aaKnown RBP15.79■□□□□ 0.12
VPS4B-202ENST00000588059 TFCP2L1Q9NZI6 479 aa15.79■□□□□ 0.12
VPS4B-202ENST00000588059 RGPD2P0DJD1 1756 aa15.79■□□□□ 0.12
VPS4B-202ENST00000588059 ANKRD36BQ8N2N9 1353 aa15.78■□□□□ 0.12
VPS4B-202ENST00000588059 IFFO2Q5TF58 517 aa15.78■□□□□ 0.12
VPS4B-202ENST00000588059 YBX3P16989 372 aaKnown RBP eCLIP15.77■□□□□ 0.12
VPS4B-202ENST00000588059 SIN3AQ96ST3 1273 aa15.77■□□□□ 0.12
VPS4B-202ENST00000588059 A0A1W2PP64 1363 aa15.76■□□□□ 0.11
VPS4B-202ENST00000588059 PRIM1P49642 420 aaKnown RBP15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms